Table 4.
True Positive Rates of AD-related SNPs in the top m SNPs.
|
10 | 50 | 100 | 200 | 500 |
|---|---|---|---|---|---|
| Matrix eQTL: linear regression | |||||
| 100 200 |
0.50 0.50 |
0.58 0.60 |
0.52 0.55 |
0.50 0.58 |
0.53 0.54 |
| Matrix eQTL: ANOVA | |||||
| 100 200 |
0.60 0.60 |
0.58 0.60 |
0.52 0.57 |
0.49 0.55 |
0.55 0.55 |
| Federated GEIDI | |||||
| 100 200 |
0.60
0.60 |
0.60
0.62 |
0.60
0.61 |
0.61
0.58 |
0.60
0.57 |
The SNPs are ranked with the p-value from hypergeometric analysis with the top. N gene expressions as the number of samples drawn from the population.