Table 1.
Stereochemical evaluation parameters for StLpxC structure models made by Modeller and different web servers
| Models | Procheck | ERRAT | Verify-3D | ProSA | YASARA | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| No. of non-glycine and non-proline residues | No. of proline, glycine and end residues | Residue coverage | Bad contacts | G-factor | Quality factor (%) | 3D-1D Scores > 0.2 (%) |
Z-Score | RMSD | ||||
| Most favored region [A,B,L] | Additionally allowed region [a,b,l,p] | Generously allowed region [~ a, ~ b, ~ l, ~ p] | Dis-allowed region | |||||||||
| YASARA | 251 (92.3%) | 20 (7.4%) | 1 (0.4%) | 0 | 33 | 305 | 3 | 0.12 | 93.266 | 100 | − 7.05 | 0.375 |
| (PS)2–3.0 | 254 (93.4%) | 17 (6.2%) | 1 (0.4%) | 0 | 33 | 305 | 1 | 0.02 | 82.8283 | 93.77 | − 7.07 | 0.123 |
| Modweb | 252 (94.0%) | 15 (5.6%) | 1 (0.4%) | 0 | 32 | 300 | 1 | 0.05 | 84.589 | 99.00 | − 7.11 | 0.125 |
| Phyre2 | 248 (91.2%) | 21 (7.7%) | 2 (0.7%) | 1 (0.4%) | 33 | 305 | 2 | − 0.05 | 76.0943 | 96.39 | − 7.16 | 0.147 |
| CPHModels-3.0 | 234 (87.3%) | 33 (12.3%) | 0 | 1 (0.4%) | 33 | 301 | 0 | 0.04 | 87.6712 | 99.67 | − 7.16 | 0.520 |
| Swiss Model | 246 (91.8%) | 21 (7.8%) | 1 (0.4%) | 0 | 36 | 304 | 1 | −0.12 | 97.561 | 98.33 | − 6.94 | 0.063 |