Table 4.
Epidermal RNA sequencing: Hallmark gene sets with significant positive or negative enrichment on GSEA, listed by NES
Hallmark gene set | NES | FDR |
---|---|---|
Positively enriched sets | ||
TNF-α signaling via NFkB | 2.514 | < 0.001 |
TGF-β signaling | 2.006 | 0.001 |
IL-6/JAKSTAT3 signaling | 1.961 | 0.001 |
IFNα response | 1.942 | 0.001 |
Inflammatory response | 1.874 | 0.002 |
Androgen response | 1.821 | 0.002 |
Early estrogen response | 1.800 | 0.003 |
Protein secretion | 1.664 | 0.009 |
IFNγ response | 1.591 | 0.014 |
Heme metabolism | 1.564 | 0.016 |
KRAS signaling ↑ | 1.515 | 0.022 |
Complement | 1.456 | 0.032 |
p53 pathway | 1.451 | 0.031 |
Late estrogen response | 1.438 | 0.032 |
Apoptosis | 1.268 | 0.109 |
mTOR-C1 signaling | 1.178 | 0.191 |
Negatively enriched sets | ||
E2F targets | -2.596 | < 0.001 |
G2M check point | -2.375 | < 0.001 |
Myogenesis | -1.800 | 0.005 |
Epithelial to mesenchymal transition | -1.796 | 0.005 |
MYC targets-V2 | -1.754 | 0.006 |
Angiogenesis | -1.732 | 0.006 |
KRAS signaling ↓ | -1.724 | 0.006 |
MYC targets-V1 | -1.671 | 0.010 |
Glycolysis | -1.606 | 0.017 |
Apical surface | -1.581 | 0.020 |
DNA repair | -1.580 | 0.018 |
Hedgehog signaling | -1.571 | 0.018 |
Spermatogenesis | -1.506 | 0.030 |
Hypoxia | -1.497 | 0.030 |
Wnt-β-catenin signaling | -1.424 | 0.054 |
Mitotic spindle | -1.298 | 0.141 |
Apical junction | -1.268 | 0.167 |
Coagulation | -1.267 | 0.159 |
Oxidative phosphorylation | -1.205 | 0.232 |
Xenobiotic metabolism | -1.189 | 0.245 |