| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Bacterial and virus strains | ||
| E. coli ATCC 25922 | ATCC | 25922 |
| P. aeruginosa ATCC 27853 | ATCC | 27853 |
| Chemicals, peptides, and recombinant proteins | ||
| Imipenem | Sigma Aldrich | 10160 |
| Meropenem | Sigma Aldrich | M2574 |
| Ertapenem | Sigma Aldrich | SML1238 |
| Doripenem | Sigma Aldrich | SML1220 |
| Ceftazidime–avibactam | GlaxoSmithKline | AVYCAZ |
| Aztreonam | Thermo Fisher Scientific | J62887.03 |
| Phosphate-buffered saline | Thermo Fisher Scientific | 003002 |
| Müller–Hinton agar | Sigma Aldrich | 70191 |
| Müller–Hinton II broth | Sigma Aldrich | 90922 |
| Ca-EDTA | Sigma Aldrich | 304695-78-1 |
| Porcine mucin | Sigma Aldrich | 84082-64-4 |
| Dexamethasone | Thermo Fisher Scientific | A17590.03 |
| Ketamine | Sigma Aldrich | K-113 |
| Isoflurane | Sigma Aldrich | 792632 |
| Fetal bovine serum | Gibco™; Waltham, MA | 1962 |
| Chlorhexidine | Thermo Fisher Scientific | 214980050 |
| Ampicillin sodium powder | Fisher BioReagents™ | BP1760-5 |
| Iodine isopropanol | Sigma-Aldrich | 148938 |
| Ethyl alcohol | Thermo Fisher Scientific | 224095000 |
| SYBR™ Green | Thermo Fisher Scientific | S7563 |
| Critical commercial assays | ||
| PrestoBlue™ HS Cell Viability Reagent | Thermo Fisher Scientific | P50200 |
| Live/Dead Bacterial Viability kit | Thermo Fisher Scientific | L7007 |
| GeneJET RNA Purification Kit | Thermo Fisher Scientific | K0731 |
| STET lysing solution | BD Bioscience | 349202 |
| qScript™ cDNA Synthesis Kit | QuantaBio | 101414-100 |
| Experimental models: Organisms/strains | ||
| C57BL/6 mice | Nomura Siam International (Bangkok, Thailand) | https://nomura-siam.com/en/ |
| Oligonucleotides | ||
| 16srRNA - for AGAGTTTGATCCTGGCTCAG 16srRNA - rev GGTTACCTTGTTACGACTT |
Daikos et al.6 | Daikos et al.6 |
| 16srRNA – for AGAGTTTGATCCTGGCTCAG 16srRNA – rev GGTTACCTTGTTACGACTT |
Wannigama et al.29/Vuotto et al.30 | Wannigama et al.29/Vuotto et al.30 |
|
kfu – for GGCCTTTGTCCAGAGCTACG kfu – rev GGGTCTGGCGCAGAGTATGC |
Wannigama et al.29/Vuotto et al.30 | Wannigama et al.29/Vuotto et al.30 |
|
ybtS – for GACGGAAACAGCACGGTAAA ybtS- rev GAGCATAATAAGGCGAAAGA |
Wannigama et al.29/Vuotto et al.30 | Wannigama et al.29/Vuotto et al.30 |
|
mrkD – for AAGCTATCGCTGTACTTCCGGCA mrkD – revGGCGTTGGCGCTCAGATAGG |
Wannigama et al.29/Vuotto et al.30 | Wannigama et al.29/Vuotto et al.30 |
|
luxS – for AGTGATGCCGGAACGCGG luxS – rev CGGTGTACCAATCAGGCTC |
Wannigama et al.29/Vuotto et al.30 | Wannigama et al.29/Vuotto et al.30 |
|
ompK35 – for GCAATATTCTGGCAGTGGTGATC ompK35 – rev ACCATTTTTCCATAGAAGTCCAGT |
Wannigama et al.29/Vuotto et al.30 | Wannigama et al.29/Vuotto et al.30 |
|
ompK36 – for TTAAAGTACTGTCCCTCCTGG ompK36 – rev TCAGAGAAGTAGTGCAGACCGTCA |
Wannigama et al.29/Vuotto et al.30 | Wannigama et al.29/Vuotto et al.30 |
|
uge – for TCTTCACGCCTTCCTTCACT uge – rev GATCATCCGGTCTCCCTGTA |
Wannigama et al.29/Vuotto et al.30 | Wannigama et al.29/Vuotto et al.30 |
|
wabG- for ACCATCGGCCATTTGATAGA wabG – rev CGGACTGGCAGATCCATATC |
Wannigama et al.29/Vuotto. et al.30 | Wannigama et al.29/Vuotto et al.30 |
| Software and algorithms | ||
| ggplot2 3.3.5 | R software package | https://www.r-project.org |
| PHLIP software | https://sourceforge.net/projects/phlip/ | |
| MATLAB | https://www.mathworks.com/products/matlab.html | |
| Other | ||
| 25-mm catheters | NIPRO | www.nipro.co.jp |