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. 2023 Jun 28;26(7):107215. doi: 10.1016/j.isci.2023.107215
REAGENT or RESOURCE SOURCE IDENTIFIER
Bacterial and virus strains

E. coli ATCC 25922 ATCC 25922
P. aeruginosa ATCC 27853 ATCC 27853

Chemicals, peptides, and recombinant proteins

Imipenem Sigma Aldrich 10160
Meropenem Sigma Aldrich M2574
Ertapenem Sigma Aldrich SML1238
Doripenem Sigma Aldrich SML1220
Ceftazidime–avibactam GlaxoSmithKline AVYCAZ
Aztreonam Thermo Fisher Scientific J62887.03
Phosphate-buffered saline Thermo Fisher Scientific 003002
Müller–Hinton agar Sigma Aldrich 70191
Müller–Hinton II broth Sigma Aldrich 90922
Ca-EDTA Sigma Aldrich 304695-78-1
Porcine mucin Sigma Aldrich 84082-64-4
Dexamethasone Thermo Fisher Scientific A17590.03
Ketamine Sigma Aldrich K-113
Isoflurane Sigma Aldrich 792632
Fetal bovine serum Gibco™; Waltham, MA 1962
Chlorhexidine Thermo Fisher Scientific 214980050
Ampicillin sodium powder Fisher BioReagents™ BP1760-5
Iodine isopropanol Sigma-Aldrich 148938
Ethyl alcohol Thermo Fisher Scientific 224095000
SYBR™ Green Thermo Fisher Scientific S7563

Critical commercial assays

PrestoBlue™ HS Cell Viability Reagent Thermo Fisher Scientific P50200
Live/Dead Bacterial Viability kit Thermo Fisher Scientific L7007
GeneJET RNA Purification Kit Thermo Fisher Scientific K0731
STET lysing solution BD Bioscience 349202
qScript™ cDNA Synthesis Kit QuantaBio 101414-100

Experimental models: Organisms/strains

C57BL/6 mice Nomura Siam International (Bangkok, Thailand) https://nomura-siam.com/en/

Oligonucleotides

16srRNA - for AGAGTTTGATCCTGGCTCAG
16srRNA - rev GGTTACCTTGTTACGACTT
Daikos et al.6 Daikos et al.6
16srRNA – for AGAGTTTGATCCTGGCTCAG
16srRNA – rev GGTTACCTTGTTACGACTT
Wannigama et al.29/Vuotto et al.30 Wannigama et al.29/Vuotto et al.30
kfu – for GGCCTTTGTCCAGAGCTACG
kfu – rev GGGTCTGGCGCAGAGTATGC
Wannigama et al.29/Vuotto et al.30 Wannigama et al.29/Vuotto et al.30
ybtS – for GACGGAAACAGCACGGTAAA
ybtS- rev GAGCATAATAAGGCGAAAGA
Wannigama et al.29/Vuotto et al.30 Wannigama et al.29/Vuotto et al.30
mrkD – for AAGCTATCGCTGTACTTCCGGCA
mrkD – revGGCGTTGGCGCTCAGATAGG
Wannigama et al.29/Vuotto et al.30 Wannigama et al.29/Vuotto et al.30
luxS – for AGTGATGCCGGAACGCGG
luxS – rev CGGTGTACCAATCAGGCTC
Wannigama et al.29/Vuotto et al.30 Wannigama et al.29/Vuotto et al.30
ompK35 – for GCAATATTCTGGCAGTGGTGATC
ompK35 – rev ACCATTTTTCCATAGAAGTCCAGT
Wannigama et al.29/Vuotto et al.30 Wannigama et al.29/Vuotto et al.30
ompK36 – for TTAAAGTACTGTCCCTCCTGG
ompK36 – rev TCAGAGAAGTAGTGCAGACCGTCA
Wannigama et al.29/Vuotto et al.30 Wannigama et al.29/Vuotto et al.30
uge – for TCTTCACGCCTTCCTTCACT
uge – rev GATCATCCGGTCTCCCTGTA
Wannigama et al.29/Vuotto et al.30 Wannigama et al.29/Vuotto et al.30
wabG- for ACCATCGGCCATTTGATAGA
wabG – rev CGGACTGGCAGATCCATATC
Wannigama et al.29/Vuotto. et al.30 Wannigama et al.29/Vuotto et al.30

Software and algorithms

ggplot2 3.3.5 R software package https://www.r-project.org
PHLIP software https://sourceforge.net/projects/phlip/
MATLAB https://www.mathworks.com/products/matlab.html

Other

25-mm catheters NIPRO www.nipro.co.jp