Table 3.

Summary of differential methylation analysis for the training set. “Hypo-M” and “Hyper-M” indicate hypomethylated and hypermethylated, respectively.

Cancer Type	Number of Differentially Methylated Probes		Number of Nearby Genes		Number of Probe-Gene Pairs
	Hypo-M	Hyper-M	Hypo-M	Hyper-M	Hypo-M	Hyper-M
COAD	3103	2195	62,039	43,895	2561	6117
KIRC	1277	691	25,540	13,820	2388	2277
BRCA	1252	1048	25,040	20,953	2490	4606
LUSC	3415	1949	68,300	38,980	2588	3451