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Summary of differential methylation analysis for the validation set. “Hypo-M” and “Hyper-M” indicate hypomethylated and hypermethylated, respectively.
| Cancer Type | Number of Differentially Methylated Probes |
Number of Nearby Genes |
Number of Probe-Gene Pairs | |||
|---|---|---|---|---|---|---|
| Hypo-M | Hyper-M | Hypo-M | Hyper-M | Hypo-M | Hyper-M | |
| COAD | 3084 | 1729 | 61,666 | 34,580 | 5324 | 3615 |
| KIRC | 1809 | 780 | 36,180 | 15,600 | 3440 | 2458 |
| BRCA | 1436 | 1278 | 28,720 | 18,180 | 2925 | 4225 |
| LUSC | 2121 | 1957 | 42,420 | 39,140 | 1543 | 4737 |
