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. 2023 Jul 13;19(7):e1011531. doi: 10.1371/journal.ppat.1011531

Table 1. Differentially expressed genes in pgl vs WT.

RNA-seq qRT-PCR
Gene Gene ID-putative function Fold-change P-value Fold-change P-value
SAUSA300_0259 –PTS system, IIA component 36.735 2.046E-09 32.55061 0.0011
bglA SAUSA300_0260–6-phospho-beta-glucosidase 15.855 5.3193E-08 13.90831 0.0001
bglR SAUSA300_0258 –transcriptional regulator, GntR family 11.124 1.2244E-05 7.099261 0.0001
scrA SAUSA300_2324 –protein = PTS system, sucrose-specific IIBC component 6.5687 0.00011885 15.57982 <0.0001
SAUSA300_0261 –conserved hypothetical protein 6.2234 6.1317E-07 17.36554 0.0003
gntP SAUSA300_2442 –gluconate permease 5.2868 0.00025352 3.323694 0.0027
pdxT SAUSA300_0505 –glutamine amidotransferase 4.9615 4.5885E-09 3.684173 <0.0001
pdxS SAUSA300_0504 –pyridoxine biosynthesis protein 4.1015 5.2554E-05 4.536557 0.0002
gntR SAUSA300_2444 –gluconate operon transcriptional repressor 3.814 0.04981606 2.999106 0.0027
gntK SAUSA300_2443 –gluconate kinase 3.8128 0.00978853 3.112866 0.0059
ptsG SAUSA300_0191 –PTS system, glucose-specific IIBC component 2.5444 0.00299481 3.796205 0.0009
glcB SAUSA300_2476 –phosphotransferase system 2.3152 0.02007086 2.988264 0.0003
sstC SAUSA300_0720 –putative iron compound ABC transporter -2.0241 0.02110039 2.041796 0.1462
SAUSA300_1099 –conserved hypothetical protein -2.0801 0.03793103 -1.869837 0.0885
sstB SAUSA300_0719 –iron compound ABC transporter, permease protein -2.152 0.0084108 1.51949 0.2920
deoD SAUSA300_0138 –purine nucleoside phosphorylase -2.3005 0.02591365 -2.540584 0.0311
pyrR SAUSA300_1091 –PyrR bifunctional protein -2.3543 0.03900896 -1.387027 0.0223
tet38 SAUSA300_0139 –putative tetracycline resistance protein -2.3613 0.00300309 -3.209246 0.0094
pyrD SAUSA300_2526 –dihydroorotate dehydrogenase -2.5145 0.00051698 -2.291344 0.0072
sstA SAUSA300_0718 –iron compound ABC transporter, permease -2.8611 0.00029593 -1.146227 0.4810
pgl SAUSA300_1902 –conserved hypothetical protein -3.772 3.2143E-06 -3.299748 0.0063
pyrP SAUSA300_1092 –uracil permease -4.2635 0.00028026 -1.615762 0.0359
pyrB SAUSA300_1093 –aspartate carbamoyltransferase -4.7399 0.0001934 -2.845135 <0.0001
pyrC SAUSA300_1094 –dihydroorotase -4.8678 0.00047335 -2.276059 0.0092
carB SAUSA300_1096 –carbamoyl-phosphate synthase -4.9226 9.2375E-05 -1.997249 0.0067
carA SAUSA300_1095 –carbamoyl-phosphate synthase -5.1135 8.3923E-05 -2.002157 0.0347
pyrF SAUSA300_1097 –orotidine 5’-phosphate decarboxylase -5.4067 0.00024603 -2.662519 0.0047
pyrE SAUSA300_1098 –orotate phosphoribosyltransferase -5.9255 0.00011739 -2.262644 0.0042