Table 2.
Summary of Optimized Plastidic Complex Models and Identified Key Residues
| Complex | Combined Subunits | Optimal Features (Subunit-ap) | Optimal Residues (Subunit-Zm) | Acc |
|---|---|---|---|---|
| NDH (ndh) | A,B,C,D,E,F,G,H,I,J,K | A-5, A-36, A-319, D-114, H-274, I-25 | A-5, A-34, A-314, D-112, H-269, I-25 | 0.9707 |
| ATP synthase (atp) | A,B,E,F,H,I | B-96, B-105, B-383, B-450, E-55, E-102, E-106, E-130, F-14, I-92 | B-96, B-105, B-383, B-450, E-55, E-102, E-106, E-130, F-14, I-92 | 0.9190 |
| Cyt b6f (pet) | A,B,D,G,L,N | A-5, A-20, A-26, A-63, A-145, A-177, D-17, L-19, L-29, N-5 | A-5, A-20, A-26, A-63, A-145, A-177, D-3, L-19, L-29, N-3 | 0.7857 |
| PSI (psa) | A,B,C,I,J | A-34, A-310, A-484, B-492, C-29, I-4, I-5, I-24 | A-34, A-310, A-484, B-492, C-29, I-24, I-5, I-24 | 0.8682 |
| PSII (psb) | A,B,C,D,E,F,H,I,J,K,L,M,T,Z | B-182, C-191, C-221, C-291, C-441, D-5, E-79, K-8, K-41, K-47 | B-182, C-177, C-207, C-277, C-427, D-5, E-79, K-8, K-39, K-45 | 0.8909 |
| 50S (rpl) | 2,14,16,20,22,23,33,36 | 2–185, 14–67, 16–120, 16–126, 16–142, 20–109, 22–103, 22–114, 23–92, 33–4 | 2–179, 14–67, 16–113, 16–119, 16–135, 20–103, 22–102, 22–113, 23–92, 33–4 | 0.8835 |
| 30S (rps) | 2,3,4,7,8,11,12,14,15,16,18,19 | 3–118, 3–174, 3–179, 3–197, 11–13, 11–122, 14–14, 16–55, 16–37, 16–48 | 3–105, 3–161, 3–166, 3–184, 11–13, 11–122, 14–14, 16–54, 16–36, 16–47 | 0.7873 |
Subunit-ap—positions numbered according to alignment positions from the specific subunit.
Subunit-Zm—positions numbered according to protein sequence positions of the specific subunit in Zea mays.
Acc-average accuracy after cross validation (using repeated random subsampling, n = 500, 70/30 train/test split).
NDH, NAD(P)H Dehydrogenase complex; Cyt b6f, cytochrome b6f complex; PSI, Photosystem I; PSII, Photosystem II; 50S, 50S ribosomal subunit; 30S, 30S ribosomal subunit.