Table 1.
Summary of Abbreviations Used to Describe the Gene Tree Analogs for the Species Topology Tests (inspired by table 1 of Goldman et al. 2000).
Tree Choice | Statistical Procedure | Optimization Algorithm | Test Statistic and Distribution | Test Statistic Comparison |
---|---|---|---|---|
pri: topologies selected a priori | NP: nonparametric bootstrap | f: all parameters are estimated (full) | c: centered distribution | d: test statistic is compared directly with its distribution |
pos: topologies chosen from analysis of data (posteriori) | P: parametric |
p: some parameters are fixed (partial) n: no optimization of any parameters |
u: uncentered distribution |
n: normal distribution assumed for statistic |