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. 2023 Jul 13;40(7):msad159. doi: 10.1093/molbev/msad159

Table 1.

Summary of Abbreviations Used to Describe the Gene Tree Analogs for the Species Topology Tests (inspired by table 1 of Goldman et al. 2000).

Tree Choice Statistical Procedure Optimization Algorithm Test Statistic and Distribution Test Statistic Comparison
pri: topologies selected a priori NP: nonparametric bootstrap f: all parameters are estimated (full) c: centered distribution d: test statistic is compared directly with its distribution
pos: topologies chosen from analysis of data (posteriori) P: parametric p: some parameters are fixed (partial)
n: no optimization of any parameters
u: uncentered
distribution
n: normal distribution assumed for statistic