Table 2.
LncRNAs associated with the sox2 gene, their respective classification and morphotype, and the lncRNA length (nt).
| Gene | LncRNA | Classification | Morphotype | Length |
|---|---|---|---|---|
| sox2 | DN21854_c0_g1_i13 | Intronic containing | Cavefish | 530 |
| sox2 | DN110_c18_g1_i1 | Intergenic convergent | Cavefish | 1018 |
| sox2 | DN21854_c0_g1_i5 | Intronic containing | Cavefish | 709 |
| sox2 | DN21854_c0_g1_i8 | Intronic containing | Cavefish | 542 |
| sox2 | DN13000_c2_g1_i1 | Intergenic convergent | Cavefish | 1048 |
| sox2 | DN21854_c0_g1_i2 | Intronic containing | Cavefish | 463 |
| sox2 | DN21854_c0_g1_i10 | Intronic containing | Cavefish | 642 |
| sox2 | DN1425_c0_g1_i11 | Intronic containing | Surface fish | 389 |
| sox2 | DN1425_c0_g1_i19 | Intronic containing | Surface fish | 662 |
| sox2 | DN1425_c0_g1_i20 | Intronic containing | Surface fish | 506 |
| sox2 | DN1425_c0_g1_i26 | Intronic containing | Surface fish | 1189 |
| sox2 | DN1425_c0_g1_i27 | Intronic containing | Surface fish | 463 |
| sox2 | DN1425_c0_g1_i42 | Intronic containing | Surface fish | 558 |
| sox2 | DN1425_c0_g1_i45 | Intronic containing | Surface fish | 345 |
| sox2 | DN1425_c0_g1_i7 | Intronic containing | Surface fish | 530 |
LncRNAs highlighted in bold correspond to shared lncRNAs between the morphotypes.