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. 2023 Jul 12;14:1230533. doi: 10.3389/fmicb.2023.1230533

TABLE 1.

The HIV-1-RT-LAMP-AuNPs-LFA primers used in this study.

Primer name Sequence and modifications Length Gene
F3 5′-ATGGCAGTATTCAT(T/C)CACAAT-3′ 21 nt pol
B3 5′-CTACTGCCCCTTCACCT-3′ 17 nt
FIP 5′-GTATGTCTGTTGCTATTAT(G/A)TCTA(T/C)-TAAAAGAAAAGGGGGGATTGG-3′ 46 mer
FIP* 5′-FAM-GTATGTCTGTTGCTATTAT(G/A)TCTA(T/C)-TAAAAGAAAAGGGGGGATTGG-3′ 46 mer
BIP 5′-TCAAAATTTTCGGGTTTATTACAG(G/A)- AG(T/G)AG(T/C)TT(T/)GCTGGTCCTT-3′ 44 mer
LF 5′-TCTTTCCCCTGCACTGTAC-3′ 19 nt
LF* 5′-Biotin-TCTTTCCCCTGCACTGTAC-3′ 19 nt
LB 5′-ACAGCAGAGA(C/T)CC(A/C)(A/C)(T/G)TTG-3′ 19 nt

pol-FIP*, 5′-labeled with FAM, pol-LF*, 5′-labeled with biotin, when used for the AuNPs-LFA assay. FAM, 6-carboxy-fluorescein; nt, nucleotide; mer, monomeric unit.