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. 2023 Jul 3;26(8):107265. doi: 10.1016/j.isci.2023.107265
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Mouse monoclonal anti-β-ACTIN Sigma Cat#A5441; RRID: AB_476744
Rabbit monoclonal anti-phospho-AKT (Ser473) (193H12) Cell Signaling Cat#4058; RRID: AB_331168
Rabbit polyclonal anti-AKT Cell Signaling Cat#9262; RRID: AB_329827
Rabbit polyclonal anti-EOMES Abcam Cat# AB23345; RRID: AB_778267
Rabbit polyclonal anti-phospho-ERK1/2 Cell Signaling Cat#9102; RRID: AB_330744
Rabbit monoclonal anti- ERK1/2 (Thr202/Tyr204) Cell Signaling Cat#4370; RRID: AB_2315112
Mouse monoclonal anti-FGFR2 (Clone #98707) R&D Systems Cat#MAB665; RRID: AB_358619
Rabbit monoclonal anti-FOXA2 Abcam Cat#AB108422; RRID: AB_11157157
Rabbit polyclonal anti-IGF1Rβ (C-20) Santa Cruz Biotechnology Cat#sc-713; RRID: AB_671792
Rabbit polyclonal anti-insulin Rβ (C-19) (IR-β) Santa Cruz Biotechnology Cat#sc-711; RRID: AB_631835
Mouse monoclonal anti-OCT3/4 Santa Cruz Biotechnology Cat#sc-5279; RRID: AB_628051
Rabbit polyclonal anti-phospho-SMAD2 (Ser465/467) MERCK Cat# AB3849; RRID: AB_11213091
Rabbit polyclonal anti-SMAD2/3 (FL-425) Santa Cruz Biotechnology Cat# sc-8332; RRID: AB_2193192
Goat polyclonal anti-SOX17 R&D Systems Cat#AF1924; RRID: AB_2195646
Rabbit polyclonal anti-SOX2 Abcam Cat# ab97959; RRID: AB_2341193
Mouse monoclonal anti-EPCAM (PE-conjugated) Biolegend Cat#324206; RRID: AB_756080

Chemicals, peptides, and recombinant proteins

Y-27632 STEMCELL Technologies Cat#72302
Activin A R&D Systems Cat#338-AC-50
CHIR99021 Tocris Cat#4423
LY294002 LC Laboratories Cat#L-7962
bFGF/FGF2 Miltenyi Biotec Cat#130-093-843
SU5402 Santa Cruz Biotechnology Cat#sc-204308
TCS ERK 11e Tocris Cat#4465
S961 Pheonix Biotech Cat#051-86
OSI-906 Selleckchem Cat#S1091
Picropodophyllotoxin (PPP) Abcam Cat#Ab144623
SB431542 Abcam Cat#AB120163

Critical commercial assays

NEXTflex™ Rapid Directional RNA-SEQ Kit, v2 PerkinElmer Cat#NOVA-5198
MN NucleoSpin RNA extraction Kit Macherey-Nagel Cat#740955
iTaqUniversal SYBR Green Supermix Bio-Rad Cat#1725124

Deposited data

RNA-Seq data This paper GSE110806

Experimental models: Cell lines

H9 hESCs (WA09) WiCell Cat#WA09
iAGb (hPSC line) Generated in-house N/A
i70b (hPSC line) Generated in-house N/A

Oligonucleotides

Silencer™ Select Pre-Designed siRNA (siFGFR2) siRNA ID: s5173 ThermoFisher Scientific N/A
Silencer™ Select Negative Control No. 2 (siScrambled) ThermoFisher Scientific 4390846
shIGF1R-1 Genetic Perturbation Platform, Broad Institute TRCN0000000425
shIGF1R-2 Genetic Perturbation Platform, Broad Institute TRCN0000039675
shERK1-1 Genetic Perturbation Platform, Broad Institute TRCN0000006150
shERK1-2 Genetic Perturbation Platform, Broad Institute TRCN0000219701
shERK2-1 Genetic Perturbation Platform, Broad Institute TRCN0000010040
shERK2-2 Genetic Perturbation Platform, Broad Institute TRCN0000342295
qPCR Primer sequences please see Table S8 This paper N/A

Software and algorithms

FlowJo™ version 10.6.0 Tree Star https://www.flowjo.com
GraphPad Prism version 9 GraphPad https://www.graphpad.com/scientificsoftware/prism/
Bio-Rad CFX Maestro version 2.3 Bio-Rad https://www.bio-rad.com/
Olympus Fluoview version 3.1 Olympus https://www.olympus-global.com/
R version 4.1 The R Foundation https://www.r-project.org