Antibodies |
|
Mouse monoclonal anti-β-ACTIN |
Sigma |
Cat#A5441; RRID: AB_476744
|
Rabbit monoclonal anti-phospho-AKT (Ser473) (193H12) |
Cell Signaling |
Cat#4058; RRID: AB_331168
|
Rabbit polyclonal anti-AKT |
Cell Signaling |
Cat#9262; RRID: AB_329827
|
Rabbit polyclonal anti-EOMES |
Abcam |
Cat# AB23345; RRID: AB_778267
|
Rabbit polyclonal anti-phospho-ERK1/2 |
Cell Signaling |
Cat#9102; RRID: AB_330744
|
Rabbit monoclonal anti- ERK1/2 (Thr202/Tyr204) |
Cell Signaling |
Cat#4370; RRID: AB_2315112
|
Mouse monoclonal anti-FGFR2 (Clone #98707) |
R&D Systems |
Cat#MAB665; RRID: AB_358619
|
Rabbit monoclonal anti-FOXA2 |
Abcam |
Cat#AB108422; RRID: AB_11157157
|
Rabbit polyclonal anti-IGF1Rβ (C-20) |
Santa Cruz Biotechnology |
Cat#sc-713; RRID: AB_671792
|
Rabbit polyclonal anti-insulin Rβ (C-19) (IR-β) |
Santa Cruz Biotechnology |
Cat#sc-711; RRID: AB_631835
|
Mouse monoclonal anti-OCT3/4 |
Santa Cruz Biotechnology |
Cat#sc-5279; RRID: AB_628051
|
Rabbit polyclonal anti-phospho-SMAD2 (Ser465/467) |
MERCK |
Cat# AB3849; RRID: AB_11213091
|
Rabbit polyclonal anti-SMAD2/3 (FL-425) |
Santa Cruz Biotechnology |
Cat# sc-8332; RRID: AB_2193192
|
Goat polyclonal anti-SOX17 |
R&D Systems |
Cat#AF1924; RRID: AB_2195646
|
Rabbit polyclonal anti-SOX2 |
Abcam |
Cat# ab97959; RRID: AB_2341193
|
Mouse monoclonal anti-EPCAM (PE-conjugated) |
Biolegend |
Cat#324206; RRID: AB_756080
|
|
Chemicals, peptides, and recombinant proteins |
|
Y-27632 |
STEMCELL Technologies |
Cat#72302 |
Activin A |
R&D Systems |
Cat#338-AC-50 |
CHIR99021 |
Tocris |
Cat#4423 |
LY294002 |
LC Laboratories |
Cat#L-7962 |
bFGF/FGF2 |
Miltenyi Biotec |
Cat#130-093-843 |
SU5402 |
Santa Cruz Biotechnology |
Cat#sc-204308 |
TCS ERK 11e |
Tocris |
Cat#4465 |
S961 |
Pheonix Biotech |
Cat#051-86 |
OSI-906 |
Selleckchem |
Cat#S1091 |
Picropodophyllotoxin (PPP) |
Abcam |
Cat#Ab144623
|
SB431542 |
Abcam |
Cat#AB120163
|
|
Critical commercial assays |
|
NEXTflex™ Rapid Directional RNA-SEQ Kit, v2 |
PerkinElmer |
Cat#NOVA-5198 |
MN NucleoSpin RNA extraction Kit |
Macherey-Nagel |
Cat#740955 |
iTaqUniversal SYBR Green Supermix |
Bio-Rad |
Cat#1725124 |
|
Deposited data |
|
RNA-Seq data |
This paper |
GSE110806 |
|
Experimental models: Cell lines |
|
H9 hESCs (WA09) |
WiCell |
Cat#WA09 |
iAGb (hPSC line) |
Generated in-house |
N/A |
i70b (hPSC line) |
Generated in-house |
N/A |
|
Oligonucleotides |
|
Silencer™ Select Pre-Designed siRNA (siFGFR2) siRNA ID: s5173 |
ThermoFisher Scientific |
N/A |
Silencer™ Select Negative Control No. 2 (siScrambled) |
ThermoFisher Scientific |
4390846 |
shIGF1R-1
|
Genetic Perturbation Platform, Broad Institute |
TRCN0000000425 |
shIGF1R-2
|
Genetic Perturbation Platform, Broad Institute |
TRCN0000039675 |
shERK1-1
|
Genetic Perturbation Platform, Broad Institute |
TRCN0000006150 |
shERK1-2
|
Genetic Perturbation Platform, Broad Institute |
TRCN0000219701 |
shERK2-1
|
Genetic Perturbation Platform, Broad Institute |
TRCN0000010040 |
shERK2-2
|
Genetic Perturbation Platform, Broad Institute |
TRCN0000342295 |
qPCR Primer sequences please see Table S8
|
This paper |
N/A |
|
Software and algorithms |
|
FlowJo™ version 10.6.0 |
Tree Star |
https://www.flowjo.com |
GraphPad Prism version 9 |
GraphPad |
https://www.graphpad.com/scientificsoftware/prism/ |
Bio-Rad CFX Maestro version 2.3 |
Bio-Rad |
https://www.bio-rad.com/ |
Olympus Fluoview version 3.1 |
Olympus |
https://www.olympus-global.com/ |
R version 4.1 |
The R Foundation |
https://www.r-project.org |