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. 2023 Jul 25;17:49. doi: 10.1186/s13036-023-00363-7

Table 1.

Current strategies to evaluate internalization of complexes into MSCs including uptake and inhibition assays

NAs Fluorescent probe for labeling Endocytic inhibitors Analytical methods Ref
miRNA (miR-218) Alexa Fluor 647 (red, miRNA), Lysotracker Green (green, lysosomes), and Hoechst 33342 (UV, cell nucleus) NO Confocal microscopy [182]
pDNA (pBMP-2) FITC (green, PEI) and DAPI (UV, cell nucleus) NO Confocal microscopy [5]
pDNA (pGFP) Cy3 (red, pDNA), WGA-Alexa Fluor (green, cytoplasm) and DAPI (UV, cell nucleus) NO Cy3 positive by FCM and confocal microscopy [86]
miRNA (miR-133a) Dy547 (red, miRNA) NO Fluorescence plate reader [206]
pDNA (pBMP-2) YOYO-1 (red, pDNA) and DAPI (UV, cell nucleus) NO Confocal microscopy [177]
pDNA (pGFP and pluc) YOYO-1 (red, pDNA) Chlorpromazine, wortmannin, genistein, Me-β-CD, baf-A1, nocodazol, and aphidicolin Confocal microscopy (internalization) and luminescence plate reader (pluc inhibition) [187]
pDNA (pBMP-2) Alex Fluor 594 conjugated dextran (red, MCMs) and pGFP (green) Chlorpromazine, Me-β-CD, and amiloride Fluorescence microscopy (internalization and pGFP inhibition) [190]
pDNA (pBMP-2) NO Sucrose, LY294002, Me-β-CD and amiloride ELISA (pBMP-2 inhibition) [110]
siRNA (siRUNX2) TAMRA (red, siRNA) NO TAMRA positive by FCM and fluorescence microscopy [185]
pDNA (pBMP-2 and pTGF-β3) Cy3 (red, pDNA), Alexa 488 Phalloidin (green, actin filaments) and DAPI (UV, cell nucleus) NO Confocal microscopy [19]
miRNA (antmiR-138) Cy3 (red, miRNA) and DAPI (UV, cell nucleus) NO Fluorescence microscopy [184]
siRNA (siNoggin) Cy3 (red, siRNA) NO Fluorescence microscopy [118]
pDNA (pGFP and pluc) Rhodamine B (red, peptide) and Hoechst 33342 (UV, cell nucleus) NO Fluorescence microscopy [189]
pDNA (pGFP) Rhodamine B (red, polyamide), Lysotracker Green DND-26 (green, endosomes) and DAPI (UV, cell nucleus) Chlorpromazine, genistein, Me-β-CD, and amiloride Confocal microscopy (internalization) and FCM (pGFP inhibition) [113]
pDNA (pOSX-GFP) Texas red (red, PEI) and DAPI (UV, cell nucleus) NO Confocal microscopy [174]
miRNA Dy547 (red, miRNA) and Calcein-AM (green, cytoplasm) NO Fluorescence microscopy [207]
miRNA (antmiR-138) Cy3 (red, miRNA) and Hoechst 33342 (UV, cell nucleus) NO Fluorescence microscopy [117]
miRNA (miR335-5p) Cy5 (red, pDNA), Atto 565 dye (pink-red, MNPs), FluoReporter Oregon Green® (green, PEI), and DAPI (UV, cell nucleus) NO Confocal microscopy [66]
miRNA (antmiR-138) Cy3 (red, miRNA) and DIO (green, cell membrane) NO Confocal microscopy [116]
pDNA (pTGF-β1) NO Chlorpromazine Luminescence plate reader (pluc) [135]
pDNA (psox9) Cy5 (red, pDNA), RITC (red, NPs) and FITC (green, PEI-PLGA nanoparticles) NO Confocal microscopy [27]

Abbreviations: miRNA micro-RNA, UV ultraviolet, pDNA plasmid DNA, BMP-2 bone morphogenic protein-2, FITC fluorescein isothiocyanate, PEI polyethyleneimine, DAPI 4', 6-diamidino-2-phenylindol, OSX osterix, GFP green fluorescent protein, Cy3 cyanine 3, luc luciferase, Me-β-CD methyl-β-cyclodextrin, baf-A1 bafilomycin A1, MCM mineral-coated microparticles, RUNX2 runt-related transcription factor 2, Cy5 cyanine 5, TGF-β1 and -β3 transforming growth factor-β1 and -β3, sox9 sex-determining region Y-type high mobility group box 9, RITC rhodamine isothiocyanate, NPs nanoparticles, PLGA poly (DL-lactic-co-glycolic acid)