Table 3.
Performance metrics.
Race | Feature selection model | Prediction method | TPR (sensitivities) | FPR | MCC | F1 |
---|---|---|---|---|---|---|
AA | Boruta | Decision tree | 0.7 | 0.166667 | 0.526789 | 0.682927 |
AA | Boruta | Random forest | 0.909091 | 0.215686 | 0.559715 | 0.625 |
AA | Boruta | Logistic | 0.733333 | 0.212766 | 0.471053 | 0.611111 |
AA | RFE | Random forest | 0.833333 | 0.22 | 0.512001 | 0.606061 |
AA | RFE | SVM | 0.8 | 0.25 | 0.427428 | 0.516129 |
AA | RFE | Decision tree | 0.368421 | 0.176471 | 0.213946 | 0.4375 |
AA | Boruta | SVM | 0.857143 | 0.272727 | 0.390796 | 0.428571 |
AA | RFE | Logistic | 0.75 | 0.277778 | 0.334493 | 0.413793 |
NHW | Boruta | Random forest | 0.8 | 0.285714 | 0.515515 | 0.761905 |
NHW | RFE | Logistic | 0.736842 | 0.285714 | 0.450564 | 0.717949 |
NHW | Boruta | Logistic | 0.647059 | 0.277778 | 0.370494 | 0.666667 |
NHW | Boruta | Decision tree | 0.631579 | 0.4375 | 0.194079 | 0.631579 |
NHW | RFE | Decision tree | 0.631579 | 0.4375 | 0.194079 | 0.631579 |
NHW | RFE | Random forest | 0.833333 | 0.22 | 0.512001 | 0.606061 |
NHW | RFE | SVM | 0.714286 | 0.428571 | 0.280976 | 0.606061 |
NHW | Boruta | SVM | 0.611111 | 0.470588 | 0.140984 | 0.594595 |
Comparison of the performance of various combinations of feature selection and classification methods.