Table 9.
Combined-Analysis of Differentially Methylated Positions Crohn’s Disease (TOPPIC and BIOM) Versus Control Subjects BIOM Dataset)
| logFC | sym | Feature | P value | Adjusted P value | |
|---|---|---|---|---|---|
| cg17501210 | -0.06 | RPS6KA2 | Body | 3.15E-35 | 1.35E-29 |
| cg21155778 | -0.06 | FGD6 | TSS200 | 4.10E-26 | 1.76E-20 |
| cg25422678 | 0.03 | BRE | Body | 3.06E-25 | 1.32E-19 |
| cg24430034 | 0.03 | ∗ | None | 4.15E-25 | 1.78E-19 |
| cg18181703 | -0.04 | SOCS3 | Body | 1.86E-24 | 8.00E-19 |
| cg18608055 | -0.05 | SBNO2 | Body | 4.39E-24 | 1.89E-18 |
| cg03546163 | -0.07 | FKBP5 | 5'UTR | 4.39E-22 | 1.89E-16 |
| cg26955383 | 0.03 | CALHM1 | TSS200 | 4.90E-22 | 2.10E-16 |
| cg26470501 | -0.03 | BCL3 | Body | 5.16E-22 | 2.22E-16 |
| cg07573872 | -0.05 | SBNO2 | Body | 2.25E-21 | 9.66E-16 |
| cg16411857 | -0.04 | NLRC5 | TSS1500 | 2.61E-21 | 1.12E-15 |
| cg12992827 | -0.05 | ∗ | None | 1.13E-20 | 4.84E-15 |
| cg04975846 | -0.05 | TRAPPC2L | Body | 5.67E-20 | 2.44E-14 |
| cg07839457 | -0.07 | NLRC5 | TSS1500 | 5.81E-20 | 2.50E-14 |
| cg12269535 | -0.04 | SRF | Body | 6.29E-20 | 2.71E-14 |
| cg09090048 | -0.04 | VPS26B | TSS1500 | 7.91E-20 | 3.40E-14 |
| cg11738543 | -0.02 | SOCS2 | Body | 2.54E-19 | 1.09E-13 |
| cg02508743 | 0.03 | LYN | Body | 3.14E-19 | 1.35E-13 |
| cg08791347 | 0.03 | FRMD4A | Body | 1.12E-18 | 4.83E-13 |
| cg01839860 | 0.02 | UBE2D2 | 5'UTR | 1.99E-18 | 8.55E-13 |
NOTE. Age, sex, smoking, estimate cell proportion included as covariates in linear model. Holm adjustment for multiple testing.
logFC, log fold change.