Fig. 4.

Error of vamos annotation in simulated data for assemblies, HiFi, and ONT reads under five divergence settings. The ground truth annotation is defined by replacing the original simulated motifs by their counterpart efficient motifs for $q=0.1$. The error is calculated by dividing the edit distance on motifs between the vamos annotation and ground truth to the number of motifs repeated in the ground truth. The divergence and gap percentages refer to the number of base mutation and indel spaces added per hundred bases of the locus