Table 2.
Number of AMR gene family classes, AMR gene families, and plasmids detected in unbaited and baited libraries.
| Sample | AMR classes | AMR gene families | Plasmid genes | |||
|---|---|---|---|---|---|---|
| Unbaited | Baited | Unbaited | Baited | Unbaited | Baited | |
| Beef 1 | 7 | 9 | 18 | 24 | 21 | 34 |
| Beef 2 | 5 | 10 | 13 | 36 | 23 | 36 |
| Beef 3 | 3 | 8 | 7 | 25 | 5 | 25 |
| Beef 4 | 5 | 6 | 11 | 14 | 24 | 31 |
| Chicken 1 | 14 | 14 | 54 | 71 | 39 | 48 |
| Chicken 2 | 9 | 11 | 36 | 49 | 25 | 27 |
| Chicken 3 | 9 | 9 | 41 | 45 | 32 | 35 |
| Chicken 4 | 6 | 9 | 14 | 29 | 21 | 24 |
| Oyster 1 | 6 | 10 | 18 | 37 | 3 | 17 |
| Oyster 2 | 4 | 7 | 11 | 24 | 3 | 13 |
| Shrimp 1 | 9 | 17 | 22 | 99 | 16 | 47 |
| Shrimp 2 | 6 | 15 | 11 | 61 | 15 | 40 |
| Veal 1 | 3 | 5 | 6 | 14 | 14 | 19 |
| Veal 1TR | 3 | 6 | 7 | 18 | 14 | 22 |
| Veal 2 | 12 | 16 | 70 | 108 | 48 | 68 |
| Veal 3 | 9 | 9 | 55 | 65 | 22 | 34 |
| Total | 103 | 162 | 394 | 719 | 325 | 520 |
TR, technical repeat.