Table 3.
Bacterial strains used in this study.
| Occupancy Rank | ||||
|---|---|---|---|---|
| European (Qin et al., 2010) | Japanese (Nishijima et al., 2016) | Bacterial species | Strain | Tested in |
| 1 | 10 | Bacteroides uniformis | JCM 5828T | Figures 1 and 2 |
| 2 | Alistipes putredinis | JCM 16772T | Figures 1 and 2 | |
| 3 | 25 | Parabacteroides merdae | JCM 9497T | Figures 1 and 2 |
| 4 | 12 | Dorea longicatena | DSM 13814T | Figures 1 and 2 |
| 5 | Ruminococcus bromii | ATCC 27255T | Figures 1 and 2 | |
| 6 | Bacteroides caccae | JCM 9498T | Figures 1 and 2 | |
| 8 | 49 | Bacteroides thetaiotaomicron | JCM 5827T | Figures 1 and 2 |
| 9 | 44 | Eubacterium hallii | ATCC 27751T | Figures 1 and 2 |
| 10 | 20, 26 | Ruminococcus torques | ATCC 27756T | Figures 1 and 2 |
| 13 | 15, 17, 21, 23 | Faecalibacterium prausnitzii | JCM 31915 | Figures 1 and 2 |
| 14 | 50 | Ruminococcus lactaris | ATCC 29176T | Figures 1 and 2 |
| 15 | 9 | Collinsella aerofaciens | JCM 7790 | Figures 1 and 2 |
| 16 | 18 | Dorea formicigenerans | ATCC 27755T | Figures 1 and 2 |
| 17 | 13 | Bacteroides vulgatus | JCM 5826T | Figures 1 and 2 |
| 18 | 37 | Roseburia intestinalis | DSM 14610T | Figures 1 and 2 |
| 20 | Eubacterium siraeum | ATCC 29066T | Figures 1 and 2 | |
| 21 | 16 | Parabacteroides distasonis | JCM 5825T | Figures 1 and 2 |
| 23 | 42 | Bacteroides ovatus | JCM 5824T | Figures 1 and 2 |
| 26 | 5 | Eubacterium rectale | JCM 17463 | Figures 1 and 2 |
| 27 | Bacteroides xylanisolvens | JCM 15633T | Figures 1 and 2 | |
| 28 | 39 | Coprococcus comes | ATCC 27758T | Figures 1 and 2 |
| 31 | Eubacterium ventriosum | ATCC 27560T | Figures 1 and 2 | |
| 32 | 22 | Phocaeicola dorei | JCM 13471T | Figures 1 and 2 |
| 33 | 19, 34 | Ruminococcus obeum | DSM 25238T | Figures 1 and 2 |
| 34 | Subdoligranulum variabile | DSM 15176T | Figures 1 and 2 | |
| 35 | Pseudoflavonifractor capillosus | ATCC 29799T | Figures 1 and 2 | |
| 36 | Streptococcus thermophilus | JCM 17834T | Figures 1 and 2 | |
| 37 | Clostridium leptum | ATCC 29065T | Figures 1 and 2 | |
| 38 | Holdemania filiformis | DSM 12042T | Figures 1 and 2 | |
| 39 | Bacteroides stercoris | JCM 9496T | Figures 1 and 2 | |
| 40 | Coprococcus eutactus | ATCC 27759T | Figures 1 and 2 | |
| 42 | Bacteroides eggerthii | JCM 12986T | Figures 1 and 2 | |
| 43 | Butyrivibrio crossotus | DSM 2876T | Figures 1 and 2 | |
| 44 | Bacteroides finegoldii | JCM 13345T | Figures 1 and 2 | |
| 45 | Parabacteroides johnsonii | JCM 13406T | Figures 1 and 2 | |
| 47 | 28 | Clostridium nexile | ATCC 27757T | Figures 1 and 2 |
| 48 | Bacteroides pectinophilus | ATCC 43243T | Figures 1 and 2 | |
| 49 | Anaerotruncus colihominis | JCM 15631T | Figures 1 and 2 | |
| 50 | 14 | Ruminococcus gnavus | ATCC 29149T | Figures 1 and 2 |
| 51 | Bacteroides intestinalis | JCM 13265 | Figures 1 and 2 | |
| 52 | 33 | Bacteroides fragilis | JCM 11019T | Figures 1 and 2 |
| 53 | Clostridium asparagiforme | DSM 15981T | Figures 1 and 2 | |
| 54 | Enterococcus faecalis | ATCC 700802 | Figures 1 and 2 | |
| 55 | Clostridium scindens | JCM 6567T | Figures 1 and 2 | |
| 56 | Blautia hansenii | JCM 14655T | Figures 1 and 2 | |
| 1 | Blautia wexlerae | JCM 17041T | Figure 3 | |
| 3 | Bifidobacterium longum | JCM 1217T | Figure 3 | |
| 4 | Bifidobacterium pseudocatenulatum | JCM 1200T | Figure 3 | |
| 7 | Bifidobacterium adolescentis | JCM 1275T | Figure 3 | |
| 11 | Anaerostipes hadrus | DSM 3319T | Figure 3 | |
| 24 | Flavonifractor plautii | ATCC 29863T | Figure 3 | |
| 27 | Roseburia inulinivorans | DSM 16841T | Figure 3 | |
| 30 | Streptococcus salivarius | JCM 5707T | Figure 3 | |
| 31 | Eggerthella lenta | DSM 2243T | Figure 3 | |
| 35 | Clostridium bolteae | JCM 12243T | Figure 3 | |
| 36 | Bilophila wadsworthia | ATCC 49260T | Figure 3 | |
| 41 | Clostridium innocuum | JCM 1292T | Figure 3 | |
| 43 | Coprococcus catus | ATCC 27761T | Figure 3 | |
| 45 | Clostridium clostridioforme | JCM 1291T | Figure 3 | |
| 46 | Roseburia hominis | JCM 17582T | Figure 3 | |