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. 2023 Jul 13;13:1056866. doi: 10.3389/fcimb.2023.1056866

Table 3.

Bacterial strains used in this study.

Occupancy Rank
European (Qin et al., 2010) Japanese (Nishijima et al., 2016) Bacterial species Strain Tested in
1 10 Bacteroides uniformis JCM 5828T Figures 1 and 2
2 Alistipes putredinis JCM 16772T Figures 1 and 2
3 25 Parabacteroides merdae JCM 9497T Figures 1 and 2
4 12 Dorea longicatena DSM 13814T Figures 1 and 2
5 Ruminococcus bromii ATCC 27255T Figures 1 and 2
6 Bacteroides caccae JCM 9498T Figures 1 and 2
8 49 Bacteroides thetaiotaomicron JCM 5827T Figures 1 and 2
9 44 Eubacterium hallii ATCC 27751T Figures 1 and 2
10 20, 26 Ruminococcus torques ATCC 27756T Figures 1 and 2
13 15, 17, 21, 23 Faecalibacterium prausnitzii JCM 31915 Figures 1 and 2
14 50 Ruminococcus lactaris ATCC 29176T Figures 1 and 2
15 9 Collinsella aerofaciens JCM 7790 Figures 1 and 2
16 18 Dorea formicigenerans ATCC 27755T Figures 1 and 2
17 13 Bacteroides vulgatus JCM 5826T Figures 1 and 2
18 37 Roseburia intestinalis DSM 14610T Figures 1 and 2
20 Eubacterium siraeum ATCC 29066T Figures 1 and 2
21 16 Parabacteroides distasonis JCM 5825T Figures 1 and 2
23 42 Bacteroides ovatus JCM 5824T Figures 1 and 2
26 5 Eubacterium rectale JCM 17463 Figures 1 and 2
27 Bacteroides xylanisolvens JCM 15633T Figures 1 and 2
28 39 Coprococcus comes ATCC 27758T Figures 1 and 2
31 Eubacterium ventriosum ATCC 27560T Figures 1 and 2
32 22 Phocaeicola dorei JCM 13471T Figures 1 and 2
33 19, 34 Ruminococcus obeum DSM 25238T Figures 1 and 2
34 Subdoligranulum variabile DSM 15176T Figures 1 and 2
35 Pseudoflavonifractor capillosus ATCC 29799T Figures 1 and 2
36 Streptococcus thermophilus JCM 17834T Figures 1 and 2
37 Clostridium leptum ATCC 29065T Figures 1 and 2
38 Holdemania filiformis DSM 12042T Figures 1 and 2
39 Bacteroides stercoris JCM 9496T Figures 1 and 2
40 Coprococcus eutactus ATCC 27759T Figures 1 and 2
42 Bacteroides eggerthii JCM 12986T Figures 1 and 2
43 Butyrivibrio crossotus DSM 2876T Figures 1 and 2
44 Bacteroides finegoldii JCM 13345T Figures 1 and 2
45 Parabacteroides johnsonii JCM 13406T Figures 1 and 2
47 28 Clostridium nexile ATCC 27757T Figures 1 and 2
48 Bacteroides pectinophilus ATCC 43243T Figures 1 and 2
49 Anaerotruncus colihominis JCM 15631T Figures 1 and 2
50 14 Ruminococcus gnavus ATCC 29149T Figures 1 and 2
51 Bacteroides intestinalis JCM 13265 Figures 1 and 2
52 33 Bacteroides fragilis JCM 11019T Figures 1 and 2
53 Clostridium asparagiforme DSM 15981T Figures 1 and 2
54 Enterococcus faecalis ATCC 700802 Figures 1 and 2
55 Clostridium scindens JCM 6567T Figures 1 and 2
56 Blautia hansenii JCM 14655T Figures 1 and 2
1 Blautia wexlerae JCM 17041T Figure 3
3 Bifidobacterium longum JCM 1217T Figure 3
4 Bifidobacterium pseudocatenulatum JCM 1200T Figure 3
7 Bifidobacterium adolescentis JCM 1275T Figure 3
11 Anaerostipes hadrus DSM 3319T Figure 3
24 Flavonifractor plautii ATCC 29863T Figure 3
27 Roseburia inulinivorans DSM 16841T Figure 3
30 Streptococcus salivarius JCM 5707T Figure 3
31 Eggerthella lenta DSM 2243T Figure 3
35 Clostridium bolteae JCM 12243T Figure 3
36 Bilophila wadsworthia ATCC 49260T Figure 3
41 Clostridium innocuum JCM 1292T Figure 3
43 Coprococcus catus ATCC 27761T Figure 3
45 Clostridium clostridioforme JCM 1291T Figure 3
46 Roseburia hominis JCM 17582T Figure 3