Table 2.
General genome features of foodborne pathogens.
| Bacterium | Strain | Genome size (bp) | Assembly | Contig | GC (%) | CDS | tRNA | rRNA | Referenced |
|---|---|---|---|---|---|---|---|---|---|
| Selected foodborne pathogens | |||||||||
| Bacillus cereus | SG_003 | 5,908,983 | Draft | 83 | 34.81 | 5,920 | 62 | 3 | This study |
| Yersinia enterocolitica | SG_002 | 4,357,829 | Draft | 123 | 46.92 | 3,932 | 66 | 3 | This study |
| Staphylococcus aureus | ATCC 23235a | 2,789,574 | Draft | 2 | 32.68 | 2,705 | 59 | 19 | ATCC |
| Newmanb | 2,878,897 | Complete | 1 | 32.89 | 2,851 | 59 | 16 | ATCC | |
| CCARM 3089c | 2,865,317 | Draft | 54 | 32.72 | 2,822 | 56 | 2 | CCARM | |
| SG_001 | 2,944,975 | Draft | 111 | 32.77 | 2,781 | 59 | 4 | This study | |
| Vibrio cholerae | SG_017 | 4,005,842 | Draft | 91 | 47.52 | 3,592 | 69 | 4 | This study |
| Vibrio parahaemolyticus | SG_014 | 6,040,036 | Draft | 81 | 44.01 | 5,740 | 135 | 5 | This study |
| Vibrio vulnificus | SG_012 | 5,012,927 | Draft | 114 | 46.66 | 4,401 | 83 | 4 | This study |
a
NCBI GenBank BioProject accession number, PRJNA224116.
b
NCBI GenBank BioProject accession number, PRJDA18801.
c
NCBI GenBank BioProject accession number, PRJNA870224.
d
ATCC, American Type Culture Collection; CCARM, Culture Collection of Antimicrobial Resistance Microbes.