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. Author manuscript; available in PMC: 2023 Jul 28.
Published in final edited form as: Proteins. 2022 Dec 13;91(4):555–566. doi: 10.1002/prot.26449

TABLE 1.

Molecular models.

Model No. PDB ID Organism Protein Mutation
1 6NDU Human MEIG1–PACRG Wild type
2 6UCC Human MEIG1–PACRG Wild type
3 6NDU Human MEIG1–PACRG W50A
4 6UCC Human MEIG1–PACRG W50A
5 6NDU Human MEIG1–PACRG Y68A
6 6UCC Human MEIG1–PACRG Y68A
7 6NDU Human MEIG1 Wild type
8 6UCC Human MEIG1 Wild type
9 6NDU Human MEIG1 W50A
10 6UCC Human MEIG1 W50A
11 6NDU Human MEIG1 Y68A
12 6UCC Human MEIG1 Y68A
13 6NDU Human PACRG Wild type
14 6UCC Human PACRG Wild type
15 2N2Y-1 and I-TASSER Mouse MEIG1–PACRG Wild type
16 2N2Y-11 and I-TASSER Mouse MEIG1–PACRG Wild type
17 2N2Y-1 and I-TASSER Mouse MEIG1–PACRG W50A
18 2N2Y-11 and I-TASSER Mouse MEIG1–PACRG W50A
19 2N2Y-1 and I-TASSER Mouse MEIG1–PACRG Y68A
20 2N2Y-11 and I-TASSER Mouse MEIG1–PACRG Y68A
21 2N2Y-1 Mouse MEIG1 Wild type
22 2N2Y-11 Mouse MEIG1 Wild type
23 2N2Y-1 Mouse MEIG1 W50A
24 2N2Y-11 Mouse MEIG1 W50A
25 2N2Y-1 Mouse MEIG1 Y68A
26 2N2Y-11 Mouse MEIG1 Y68A
27 I-TASSER Mouse PACRG Wild type

Note: The models extracted from PDB are underlined. The mouse model 2N2Y7 was obtained from solution NMR, which contains 20 conformations. The two conformations (Nos. 1 and 11) were chosen for GaMD simulations. Models 15, 17, 19, 21, 23, and 25 were from the first NMR conformation; models 16, 18, 20, 22, 24, and 26 were from the 11th NMR conformation. The mouse PACRG model was predicted using the I-TASSER server.33

Abbreviations: GaMD, Gaussian-accelerated molecular dynamics; MEIG1, meiosis-expressed gene 1; PACRG, Parkin co-regulated gene; PDB, Protein Data Bank.