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Illustration of the workflow of SARTRE. (a) Toy network of six reactions, five metabolites, and three proteins. Reaction 3 has GPR rule that involves P1 AND P2, while Reaction 3 involves P1 OR P3. (b) Metabolite and protein features are generated based on shadow prices and GPR rules for each reaction, respectively, (c) the gold standard of MPIs is then used with the features to build a classifier (d).
