Fig. 1.

Accessing JBrowse using the JBrowse/Apollo pulldown menu. When you select a genome in the pulldown menu, JBrowse opens, but may not display any tracks. The top number line shows the coordinates along the entire chromosome, with the range of the current view shown in the red rectangle. The lower number line displays the coordinates of the current view. Arrows for panning left and right and buttons for zooming in and out are above the browser, to the left of the pulldown menu that lists the chromosomes in descending order by length. The search box can take coordinates, gene symbols, and identifiers. Tracks for visualization are selected using the Select tracks button, circled in red on figure left. The login button circled on figure right provides access to the Apollo annotation tool