1. Sample Name |
<name of the sample retrieved from the fastq name> |
2. ACC. NUMBER |
<GenBank accession number of the matching reference sequence> |
3. Reads |
<number of reads> |
4. ref_len |
<length of the ORF1 of the matching reference sequence> |
5. cov |
<length of the matching reference sequence covered by the reads> |
6. %cov |
<percentage of the matching reference sequence covered by the reads> |
7. depth |
<median depth> |
8. GENUS |
<genus of the reference sequence> |
9. GROUP |
<group within the genus> |
10. SPECIES |
<species of the reference sequence> |
11. GENOTYPE |
<genotype of the reference sequences if any> |
12. HOST |
<host infected by the reference sequence> |