| Antibodies |
|
|
|
| anti-GFP antibody |
Thermo Fisher Scientific |
Cat# A-21311; RRID: AB_221477 |
| anti-GFP antibody |
Thermo Fisher Scientific |
Cat# A-31852; RRID: AB_162553 |
|
| Bacterial and virus strains |
|
|
|
| AAV1-EF1a-DIO-GCaMP6f |
Stanford Viral Vector Core |
custom prep |
| AAV1-EF1a-DIO-YFP |
Stanford Viral Vector Core |
custom prep |
| AAV1-hSyn-YFP |
Stanford Viral Vector Core |
custom prep |
| AAV5-hSyn-YFP |
UNC Viral Vector Core |
custom prep |
| AAV8-hSyn-YFP |
Stanford Viral Vector Core |
custom prep |
| AAVdj-hSyn-YFP |
Stanford Viral Vector Core |
custom prep |
| AAVdj-hSyn-GCaMP6m |
Stanford Viral Vector Core |
custom prep |
| AAV8-EF1a-DIO-GCaMP6m |
Stanford Viral Vector Core |
custom prep |
| AAV1-EF1a-DIO-H2B-GCaMP6f |
Stanford Viral Vector Core |
custom prep |
| AAV1-Ef1a-DIO-ChRmine-oScarlet |
Stanford Viral Vector Core |
custom prep |
| AAV1-nEF-CreOnFlpOff-ChRmine-p2A-oScarlet |
Stanford Viral Vector Core |
custom prep |
| AAV1-nEF-CreOnFlpOff-eNpHR3.0-YFP |
Stanford Viral Vector Core |
custom prep |
| AAV8-Ef1a-FlpO |
Stanford Viral Vector Core |
custom prep |
|
| Chemicals, peptides, and recombinant proteins |
|
|
| methacryloxypropyltrimethoxysilane |
GE Healthcare |
17-1330-01 |
| poly-L-lysine |
Sigma-Aldrich |
P6407 |
| Glass Bottom Plates |
MatTekq |
P12G-1.5-14-F |
| Micro coverglass |
EMS |
72,226-01 |
| OTC |
Fisher |
23-730-571 |
| 16% PFA |
EMS |
15710-S |
| PBS |
Gibco |
70,011–044 |
| Triton X-100 |
Sigma-Aldrich |
93,443 |
| OminiPur Formamide |
Calbiochem |
75-12-7 |
| 20×SSC buffer |
Sigma-Aldrich |
S6639 |
| dNTP mix |
Invitrogen |
100,004,893 |
| Tween 20 |
Calbiochem |
655,206 |
| SUPERase |
Invitrogen |
AM2696 |
| RVC |
New England Biolabs |
S1402S |
| Salmon Sperm |
Invitrogen |
AM9680 |
| T4 DNA ligase |
Thermo Scientific |
EL0011 |
| Phi29 DNA polymerase |
Thermo Fisher Scientific |
EP0094 |
| BSA |
New England Biolabs |
EP0094 |
| BSPEG9 |
Thermo Fisher Scientific |
21,582 |
| Phi29 DNA polymerase |
Thermo Fisher Scientific |
EP0094 |
| Acrylic acid NHS ester |
Sigma-Aldrich |
A8060 |
| Methacrylic acid NHS ester |
Sigma-Aldrich |
730,300 |
| DMSO |
Sigma-Aldrich |
D12345 |
| Acrylamide, 40% |
BioRad |
161-0140 |
| Bis-acrylamide, 2% |
BioRad |
161-0142 |
| Ammonium persulfate |
Sigma-Aldrich |
A3678 |
| Tetramethylethylenediamine |
Sigma-Aldrich |
T9281 |
| OminiPur SDS |
Calbiochem |
7991 |
| Shrimp Alkaline Phosphatase |
New England Biolabs |
M0371L |
| DAPI |
Molecular Probes |
D1306 |
| NeuroTrace Nissl Stain |
Molecular Probes |
N-21480 |
| Gel Slick |
Lonza |
50,640 |
| Proteinase K |
Invitrogen |
25,530,049 |
| superfrost plus slides |
Fisher Scientific |
22-037-246 |
| Hybrislips |
EMS |
7,032,962 |
| Trimethroprim (TMP) |
Sigma-Aldrich |
92,131-1G |
| Heparin |
Sigma-Aldrich |
H4784-250MG |
| 50× Denhardt’s solution |
Sigma-Aldrich |
D2532-5ML |
| Dextran Sulfate |
Sigma-Aldrich |
D6001 |
| Fluorescent beads |
Lumafluor |
Red Retrobeads |
| Alexa 514-Labeled Hairpins |
Molecular Technologies |
B5-H1/H2-514 |
| Alexa 555-Labeled Hairpins |
Molecular Technologies |
B2-H1/H2-555 |
| Alexa 593-Labeled Hairpins |
Molecular Technologies |
B4-H1/H2-593 |
| Alexa 647-Labeled Hairpins |
Molecular Technologies |
B1-H1/H2-647 |
| Methanol |
Sigma-Aldrich |
322,415 |
| Dichloromethane |
Sigma-Aldrich |
270,997 |
| Ethyl cinnamate |
Sigma-Aldrich |
112,372 |
| Trypsin |
Sigma-Aldrich |
59427C |
| CM-DiI |
Thermo Fisher Scientific |
V22888 |
| DiD |
Thermo Fisher Scientific |
D7757 |
| DID-DS |
Thermo Fisher Scientific |
D12730 |
|
| Experimental models: Organisms/strains |
|
|
|
| Th-Cre (Ththm1(cre)Te
|
Lindeberg |
MGI:3056580 |
| B6; 129S-Tac1tm1.1(cre)Hze
|
Jax |
021,877 |
| Tg(Chat-cre)GM24Gsat/Mmucd |
MMRRC |
#017269-UCD |
| B6.Cg-Calb1tm1.1(folA/cre)Hze/J |
Jax |
#023531 |
| C57/Bl6 |
Jax |
#000664 |
|
| Oligonucleotides |
|
|
|
| Calb1_01 |
IDT (for STARmap) |
/5Phos/ACATTAGCCAACTCTACAATTCCTATAATTATTAATGAAACATACACTAAAGATA |
| Calb1_02 |
IDT (for STARmap) |
/5Phos/ACATTATCAGCGTCGAAATGAAGCCAGAATTATTAATGAAACATACACTAAAGATA |
| Calb1_03 |
IDT (for STARmap) |
/5Phos/ACATTAGGAAATTTTCCTGCACTGGTAATTATTAATGAAACATACACTAAAGATA |
| Calb1_04 |
IDT (for STARmap) |
/5Phos/ACATTAATTTCATTTCCGGTGATAGCTAATTATTAATGAAACATACACTAAAGATA |
| Calb1_11 |
IDT (for STARmap) |
TCTTCTGTGGGTAAGACGTGTAATGTTATCTT |
| Calb1_12 |
IDT (for STARmap) |
CTTCCAGGTAACCACTTCCGTAATGTTATCTT |
| Calb1_13 |
IDT (for STARmap) |
TGATTCCCTGGAATTTAAGATAATGTTATCTT |
| Calb1_14 |
IDT (for STARmap) |
CTGTCCATATTGATCCACAAATAATGTTATCTT |
| Calb2_01 |
IDT (for STARmap) |
/5Phos/ACATTAGAGCACAATCTCCAGGTCCTAATTATTACTGAAACATACACTAAAGATA |
| Calb2_02 |
IDT (for STARmap) |
/5Phos/ACATTAGGTGGTGAGCTGTTGGATGTAATTATTACTGAAACATACACTAAAGATA |
| Calb2_03 |
IDT (for STARmap) |
/5Phos/ACATTAATCCGTAGTATGGTCTGGGTGTAATTATTACTGAAACATACACTAAAGATA |
| Calb2_04 |
IDT (for STARmap) |
/5Phos/ACATTAAGCCCACGTGCTGCCTGAAGCAAATTATTACTGAAACATACACTAAAGATA |
| Calb2_11 |
IDT (for STARmap) |
TTACACGGGGGGCTCACTGCTAATGTTATCTT |
| Calb2_12 |
IDT (for STARmap) |
AGGACATGACACTCTTCCTGTAATGTTATCTT |
| Calb2_13 |
IDT (for STARmap) |
TGCCATCTCCATTTAAGTCAAATAATGTTATCTT |
| Calb2_14 |
IDT (for STARmap) |
AAGCCTCCATAAACTCAGCGCTTAATGTTATCTT |
| Cartpt_01 |
IDT (for STARmap) |
/5Phos/ACATTACCTTTCCTCACTGCGCACTGAATTATTAGTGAAACATACACTAAAGATA |
| Cartpt_02 |
IDT (for STARmap) |
/5Phos/ACATTAAAGTTGCCGCCTTGGCAGCTAATTATTAGTGAAACATACACTAAAGATA |
| Cartpt_03 |
IDT (for STARmap) |
/5Phos/ACATTAGCGTTTACTCTTGAGCTTCTAATTATTAGTGAAACATACACTAAAGATA |
| Cartpt_04 |
IDT (for STARmap) |
/5Phos/ACATTAAGTAGCAGCAGGGCGGCGCCCAATTATTAGTGAAACATACACTAAAGATA |
| Cartpt_11 |
IDT (for STARmap) |
ACAGCTTCCCGATCCTGGCTAATGTTATCTT |
| Cartpt_12 |
IDT (for STARmap) |
AACATAGCGCCGGGAGCCCTAATGTTATCTT |
| Cartpt_13 |
IDT (for STARmap) |
ACTTCTTCTCGTAGATCGGATAATGTTATCTT |
| Cartpt_14 |
IDT (for STARmap) |
ACGGGCACCCAGCAAAGGTATAATGTTATCTT |
| Chat_01 |
IDT (for STARmap) |
/5Phos/ACATTATTCGCTCCATTCAAGCTGCAAATTATTATTGAAACATACACTAAAGATA |
| Chat_02 |
IDT (for STARmap) |
/5Phos/ACATTAGGACGCCATTTTGACTATCTAATTATTATTGAAACATACACTAAAGATA |
| Chat_03 |
IDT (for STARmap) |
/5Phos/ACATTATCTCTCATGTCAACAAGGCTAATTATTATTGAAACATACACTAAAGATA |
| Chat_04 |
IDT (for STARmap) |
/5Phos/ACATTAATTAATGACAACATCCAAGACAAATTATTATTGAAACATACACTAAAGATA |
| Chat_11 |
IDT (for STARmap) |
GGGACTTGTCATACCAACGTAATGTTATCTT |
| Chat_12 |
IDT (for STARmap) |
GGCAGGCGTTCATCCTCGTTAATGTTATCTT |
| Chat_13 |
IDT (for STARmap) |
AGGCTGCCTCGAACTACAGATAATGTTATCTT |
| Chat_14 |
IDT (for STARmap) |
TCACCCTCACTGAGACGGCGGTAATGTTATCTT |
| Elfn1_01 |
IDT (for STARmap) |
/5Phos/ACATTAAGTCTGAGACGCTCCCAGATAATTATTAATGAACCATACACTAAAGATA |
| Elfn1_02 |
IDT (for STARmap) |
/5Phos/ACATTACGTCGATGCAGTTGTTAATGAATTATTAATGAACCATACACTAAAGATA |
| Elfn1_03 |
IDT (for STARmap) |
/5Phos/ACATTATACAGGTACTCGAGCTTGCTAATTATTAATGAACCATACACTAAAGATA |
| Elfn1_04 |
IDT (for STARmap) |
/5Phos/ACATTACGTACTGGCGACTCTTGTCGGCAATTATTAATGAACCATACACTAAAGATA |
| Elfn1_11 |
IDT (for STARmap) |
CCTTGTGTCTCCGTCGGCTTAATGTTATCTT |
| Elfn1_12 |
IDT (for STARmap) |
GGTGGACTCGGACTTGAGGTAATGTTATCTT |
| Elfn1_13 |
IDT (for STARmap) |
CGATGAGGTTGGCCTGTAGTAATGTTATCTT |
| Elfn1_14 |
IDT (for STARmap) |
GGGGTATGAGTGCCGATGCTCTAATGTTATCTT |
| GAD2_01 |
IDT (for STARmap) |
/5Phos/ACATTAGGACATCAGTAACCCTCCACAATTATTACTGAACCATACACTAAAGATA |
| GAD2_02 |
IDT (for STARmap) |
/5Phos/ACATTACTCTAACCAGGAGAGCTGAAAATTATTACTGAACCATACACTAAAGATA |
| GAD2_03 |
IDT (for STARmap) |
/5Phos/ACATTAAACGCGTAGTTGACATCCCCTTAATTATTACTGAACCATACACTAAAGATA |
| GAD2_04 |
IDT (for STARmap) |
/5Phos/ACATTACTCCAGATTTTGCGGTTGGTCTAATTATTACTGAACCATACACTAAAGATA |
| GAD2_11 |
IDT (for STARmap) |
AGCTTCCACTTGTGTTTCCTAATGTTATCTT |
| GAD2_12 |
IDT (for STARmap) |
AGCTCTGCATCAGTCCCTCCTAATGTTATCTT |
| GAD2_13 |
IDT (for STARmap) |
AGCAGGTCTGTTGCGTGCATAATGTTATCTT |
| GAD2_14 |
IDT (for STARmap) |
TGTTTGGCAATGCGTCAAAATTTAATGTTATCTT |
| Gpr151_01 |
IDT (for STARmap) |
/5Phos/ACATTAAACAAATGTCAAGCTCTTGGAATTATTAGTGAACCATACACTAAAGATA |
| Gpr151_02 |
IDT (for STARmap) |
/5Phos/ACATTAATTGTCTTGTGCTGAAGGGAAATTATTAGTGAACCATACACTAAAGATA |
| Gpr151_03 |
IDT (for STARmap) |
/5Phos/ACATTATAGGATGCATGTTTGGGTCTAATTATTAGTGAACCATACACTAAAGATA |
| Gpr151_04 |
IDT (for STARmap) |
/5Phos/ACATTAGTTGCTGGAATTGGTGTCGGAATTATTAGTGAACCATACACTAAAGATA |
| Gpr151_11 |
IDT (for STARmap) |
AAGCATGCTTTGGCTACCATAATGTTATCTT |
| Gpr151_12 |
IDT (for STARmap) |
TGTTCCCAGGGTATAGGGTTAATGTTATCTT |
| Gpr151_13 |
IDT (for STARmap) |
AGACCCACGTCCGTCTGTGTTAATGTTATCTT |
| Gpr151_14 |
IDT (for STARmap) |
GCGAGCAAACGACTCGTTCATAATGTTATCTT |
| Htr5b_01 |
IDT (for STARmap) |
/5Phos/ACATTACACGCCAATCAAGATCCCGAAATTATTATTGAACCATACACTAAAGATA |
| Htr5b_02 |
IDT (for STARmap) |
/5Phos/ACATTAAAGGTTACTGTTGCTCGGCGAATTATTATTGAACCATACACTAAAGATA |
| Htr5b_03 |
IDT (for STARmap) |
/5Phos/ACATTAGGACAACTCGCTCACCAGGCTAATTATTATTGAACCATACACTAAAGATA |
| Htr5b_04 |
IDT (for STARmap) |
/5Phos/ACATTAATTCCATAAGAAAGTGGCAACGAATTATTATTGAACCATACACTAAAGATA |
| Htr5b_11 |
IDT (for STARmap) |
GGGGATCCAACAAAGCACAATAATGTTATCTT |
| Htr5b_12 |
IDT (for STARmap) |
CCACGAGTCTCCGCTTGTCTTAATGTTATCTT |
| Htr5b_13 |
IDT (for STARmap) |
CCTAGCTGCCAACGTCGCCCATAATGTTATCTT |
| Htr5b_14 |
IDT (for STARmap) |
AGGATAGTCACCAGAACTAGCTAATGTTATCTT |
| Oprm1_01 |
IDT (for STARmap) |
/5Phos/ACATTAGCATGATGAAGGCGAAGATGAATTATTAATGAAGCATACACTAAAGATA |
| Oprm1_02 |
IDT (for STARmap) |
/5Phos/ACATTACTTGAGTCGTAAGATCATCAGTAATTATTAATGAAGCATACACTAAAGATA |
| Oprm1_03 |
IDT (for STARmap) |
/5Phos/ACATTAACCCCTGCCTGTATTTTGTGGTAATTATTAATGAAGCATACACTAAAGATA |
| Oprm1_04 |
IDT (for STARmap) |
/5Phos/ACATTACCGTGGAGGGGTGTTCCCTAGTAATTATTAATGAAGCATACACTAAAGATA |
| Oprm1_11 |
IDT (for STARmap) |
ACACAGTGATGATGAGGACCTAATGTTATCTT |
| Oprm1_12 |
IDT (for STARmap) |
GGAGCCCGACAGCATGCGGACATAATGTTATCTT |
| Oprm1_13 |
IDT (for STARmap) |
AGAACGTGAGGGTGCAATCTATTAATGTTATCTT |
| Oprm1_14 |
IDT (for STARmap) |
GGTTAGTTCGATCCACTGTATTTAATGTTATCTT |
| Slc17a7_01 |
IDT (for STARmap) |
/5Phos/ACATTAGACGTAAAGAAGCGCCTCCAAATTATTACTGAAGCATACACTAAAGATA |
| Slc17a7_02 |
IDT (for STARmap) |
/5Phos/ACATTAACATTATGTGACGACTGCGCAATTATTACTGAAGCATACACTAAAGATA |
| Slc17a7_03 |
IDT (for STARmap) |
/5Phos/ACATTATTCAAAGTAGGCGGGCTGAGAGAATTATTACTGAAGCATACACTAAAGATA |
| Slc17a7_04 |
IDT (for STARmap) |
/5Phos/ACATTAAGGGTGGAGGTAGCCACAATGGAATTATTACTGAAGCATACACTAAAGATA |
| Slc17a7_11 |
IDT (for STARmap) |
ATGATGGCATAGACGGGCATTAATGTTATCTT |
| Slc17a7_12 |
IDT (for STARmap) |
AGCTTTCGCACGTTGGTAGTTAATGTTATCTT |
| Slc17a7_13 |
IDT (for STARmap) |
GCTGATCTCAAAGCCGAACACTTAATGTTATCTT |
| Slc17a7_14 |
IDT (for STARmap) |
GCTGCTGAAGGGATCAACATGTTAATGTTATCTT |
| Sst_01 |
IDT (for STARmap) |
/5Phos/ACATTACCATTGCTGGGTTCGAGTTGAATTATTAGTGAAGCATACACTAAAGATA |
| Sst_02 |
IDT (for STARmap) |
/5Phos/ACATTACCAGAAGAAGTTCTTGCAGCAATTATTAGTGAAGCATACACTAAAGATA |
| Sst_03 |
IDT (for STARmap) |
/5Phos/ACATTACCAGTTCCTGTTTCCCGGTGAATTATTAGTGAAGCATACACTAAAGATA |
| Sst_04 |
IDT (for STARmap) |
/5Phos/ACATTAGACGGAGTCTGGGGTCCGAGGGAATTATTAGTGAAGCATACACTAAAGATA |
| Sst_11 |
IDT (for STARmap) |
AGCTTTGCGTTCCCGGGGTTAATGTTATCTT |
| Sst_12 |
IDT (for STARmap) |
CTAACAGGATGTGAATGTCTTAATGTTATCTT |
| Sst_13 |
IDT (for STARmap) |
AGCTCTGCCAAGAAGTACTTTAATGTTATCTT |
| Sst_14 |
IDT (for STARmap) |
CGCCAGAGACTTCTGCAGAAATAATGTTATCTT |
| Sstr4_01 |
IDT (for STARmap) |
/5Phos/ACATTAAAGCACTGCGCGACACAGCAAATTATTATTGAAGCATACACTAAAGATA |
| Sstr4_02 |
IDT (for STARmap) |
/5Phos/ACATTAGCACGAGCCTAGTGATCTTCAATTATTATTGAAGCATACACTAAAGATA |
| Sstr4_03 |
IDT (for STARmap) |
/5Phos/ACATTAGATGACCAGGGCGTTTCCCAAATTATTATTGAAGCATACACTAAAGATA |
| Sstr4_04 |
IDT (for STARmap) |
/5Phos/ACATTAAGAACCGGGAGTAGGAAGCCCAAATTATTATTGAAGCATACACTAAAGATA |
| Sstr4_11 |
IDT (for STARmap) |
ATGTTCAGGCCGTCCACGCTAATGTTATCTT |
| Sstr4_12 |
IDT (for STARmap) |
AAAGACGGTCACCACCATTTAATGTTATCTT |
| Sstr4_13 |
IDT (for STARmap) |
TGGCATAGCGTAGGATCACGTAATGTTATCTT |
| Sstr4_14 |
IDT (for STARmap) |
AGCAGGTAGCATAATCCGATGGTAATGTTATCTT |
| Syt10_01 |
IDT (for STARmap) |
/5Phos/ACATTAGTCGTCTTTTCTGTTGCCCTAATTATTAATGAATCATACACTAAAGATA |
| Syt10_02 |
IDT (for STARmap) |
/5Phos/ACATTATTCGACACACGCCTATGACCTAATTATTAATGAATCATACACTAAAGATA |
| Syt10_03 |
IDT (for STARmap) |
/5Phos/ACATTATTTCCATACTGTGGCTTCCCTAATTATTAATGAATCATACACTAAAGATA |
| Syt10_04 |
IDT (for STARmap) |
/5Phos/ACATTACTCGTTCCAATGGTCTCTCCCAAATTATTAATGAATCATACACTAAAGATA |
| Syt10_11 |
IDT (for STARmap) |
AGTTTCCCACAGGTCTTGATAATGTTATCTT |
| Syt10_12 |
IDT (for STARmap) |
AGACCCTCAGCGTCTAGTCCTAATGTTATCTT |
| Syt10_13 |
IDT (for STARmap) |
TCTGTGGTAGCACAGTGGATATAATGTTATCTT |
| Syt10_14 |
IDT (for STARmap) |
TGGCTTTCGGTGATAGGCCAGCTAATGTTATCTT |
| Tac1_01 |
IDT (for STARmap) |
/5Phos/ACATTAGCGATTCTCTGCAGAAGATGAATTATTACTGAATCATACACTAAAGATA |
| Tac1_02 |
IDT (for STARmap) |
/5Phos/ACATTACAAAGAACTGCTGAG GCTTGAATTATTACTGAATCATACACTAAAGATA |
| Tac1_03 |
IDT (for STARmap) |
/5Phos/ACATTAATCGCGCTTCTTTCATAAGCAATTATTACTGAATCATACACTAAAGATA |
| Tac1_04 |
IDT (for STARmap) |
/5Phos/ACATTACCCATTAGTCCAACAAAGGAATAATTATTACTGAATCATACACTAAAGATA |
| Tac1_11 |
IDT (for STARmap) |
GCTGAGGCTTGGGTCTTCGTAATGTTATCTT |
| Tac1_12 |
IDT (for STARmap) |
ATCCCGCTTGCCCATTAATTAATGTTATCTT |
| Tac1_13 |
IDT (for STARmap) |
ACGTCTTCTTTCGTAGTTCTTAATGTTATCTT |
| Tac1_14 |
IDT (for STARmap) |
GCCACAGAATTTAAAGCTCTTTTAATGTTATCTT |
| Tac2_01 |
IDT (for STARmap) |
/5Phos/ACATTAAGCCGCAAACAGCATGGCGCAATTATTAGTGAATCATACACTAAAGATA |
| Tac2_02 |
IDT (for STARmap) |
/5Phos/ACATTACGGTGGGAGTGTCTGGTTGGCAATTATTAGTGAATCATACACTAAAGATA |
| Tac2_03 |
IDT (for STARmap) |
/5Phos/ACATTATGTCACGTTTCTGTGGAAGTGAATTATTAGTGAATCATACACTAAAGATA |
| Tac2_04 |
IDT (for STARmap) |
/5Phos/ACATTATCTCCGAAGCAGGGACGGAGGCAATTATTAGTGAATCATACACTAAAGATA |
| Tac2_11 |
IDT (for STARmap) |
AGCCAAGCTGAGGGCGAGGATAATGTTATCTT |
| Tac2_12 |
IDT (for STARmap) |
GGGGTGTTCTCTTCAACCACTAATGTTATCTT |
| Tac2_13 |
IDT (for STARmap) |
AGTCCCACAAAGAAGTCGTGTAATGTTATCTT |
| Tac2_14 |
IDT (for STARmap) |
AGAGACAGGGCGGCTGTCGTAGTAATGTTATCTT |
| Th_01 |
IDT (for STARmap) |
/5Phos/ACATTAGAAGTGAGACACATCCTCCAAATTATTATTGAATCATACACTAAAGATA |
| Th_02 |
IDT (for STARmap) |
/5Phos/ACATTACTCGAATACCACAGCCTCCAAATTATTATTGAATCATACACTAAAGATA |
| Th_03 |
IDT (for STARmap) |
/5Phos/ACATTAGGCTTCAAATGTCTCAAACACTAATTATTATTGAATCATACACTAAAGATA |
| Th_04 |
IDT (for STARmap) |
/5Phos/ACATTAGAGGCATAGTTCCTGAGCTTGTAATTATTATTGAATCATACACTAAAGATA |
| Th_11 |
IDT (for STARmap) |
AAGCCAGTCCGTTCCTTCATAATGTTATCTT |
| Th_12 |
IDT (for STARmap) |
ACAGCATTTCCATCCCTCTTAATGTTATCTT |
| Th_13 |
IDT (for STARmap) |
CCGGGTCTCTAAGTGGTGGATTTAATGTTATCTT |
| Th_14 |
IDT (for STARmap) |
ACAGAGAATGGGCGCTGGATACTAATGTTATCTT |
| Mus-Calb1-B4P1 |
IDT (for ISH) |
cactctcaaactagccgctgcaccacgatggcagaatcccacctgcagtcat |
| Mus-Calb1-B4P2 |
IDT (for ISH) |
agaaaagtagatatcgtgaatcattatagccgaaggactctaataaaaattt |
| Mus-Calb1-B4P3 |
IDT (for ISH) |
aatagtaccaagtttggcattcttactaatagtagtagaacaaatcctataa |
| Mus-Calb1-B4P4 |
IDT (for ISH) |
cgccgcgcccagctcagcctgcgcagccctctcgcccgaggttcgcgctccg |
| Mus-Calb1-B4P5 |
IDT (for ISH) |
aagactgtggatgatacaaaactagcagagtacacagacctcatgctgaaac |
| Mus-Calb1-B4P6 |
IDT (for ISH) |
ccagtgcaggaaaatttccttcttaaattccagggaatcaaaatgtgtggga |
| Mus-Calb1-B4P7 |
IDT (for ISH) |
ggagggaagctgtaccgaacagaccttgctcttattctttctgctggagaca |
| Mus-Calb1-B4P8 |
IDT (for ISH) |
tagagttggtgaccacaaccacttgctagtgatacattgtatctaaaaccat |
| Mus-Calb1-B4P9 |
IDT (for ISH) |
aaatatcaacagttaattatggctttattctgaaacgatctccctagagatt |
| Mus-Calb1-B4P10 |
IDT (for ISH) |
atgcctatatttccaagaagtctactgccagagagtatgaccatagcccatt |
| Mus-Calb1-B4P11 |
IDT (for ISH) |
ctaaattattttcatgtgttccagatgacaattattctagtaaactgctgtt |
| Mus-Calb1-B4P12 |
IDT (for ISH) |
tatttcatcaaaacttgtgtattctgtggattctatggttcatattgagatc |
| Mus-Calb1-B4P13 |
IDT (for ISH) |
aggtttgggtcaggttggatttaagcactttttttcaattgttgttcataaa |
| Mus-Calb1-B4P14 |
IDT (for ISH) |
atttgtttctaccccaaagtgttaattgtcatgtaatctgttatcaattagg |
| Mus-Calb1-B4P15 |
IDT (for ISH) |
gcgcgaaagaaggctggattggagctatcaccggaaatgaaatcctttgtgg |
| Mus-Calb1-B4P16 |
IDT (for ISH) |
caatatggacagagagatgatggaaaaataggaattgtagagttggctcacg |
| Mus-Calb1-B4P17 |
IDT (for ISH) |
ttacccacagaagagaatttcttgctgctctttcgatgccagcaactgaagt |
| Mus-Calb1-B4P18 |
IDT (for ISH) |
atcgaaaccgaggaacttaagaactttctaaaggacctactagagaaagcaa |
| Mus-Calb1-B4P19 |
IDT (for ISH) |
tttgattcaaataatgacggaaagctggaactgacagagatggccaggttac |
| Mus-Calb1-B4P20 |
IDT (for ISH) |
gagttcaataaggcttttgagttatatgatcaggatggcaacggatacatag |
| Mus-ChAT-B5P1 |
IDT (for ISH) |
gcgtccaacgaggatgaacgcctgcctccaatcggcctgctgacgtcagacg |
| Mus-ChAT-B5P2 |
IDT (for ISH) |
gctaggatgcctatcctggaaaaggtccccccaaagatgcctgtacaagctt |
| Mus-ChAT-B5P3 |
IDT (for ISH) |
gaatactggctgaatgacatgtatctaaacaaccgcctggccctgccagtca |
| Mus-ChAT-B5P4 |
IDT (for ISH) |
cgccgtctcagtgagggtgatctgttcactcagttgagaaagatagtcaaaa |
| Mus-ChAT-B5P5 |
IDT (for ISH) |
atgagagacctctgtagttcgaggcagcctgctgaaggcaagccaccaacag |
| Mus-ChAT-B5P6 |
IDT (for ISH) |
aaggaaagagctagaggcccaaccaagccaagcaatcttgactactcccact |
| Mus-ChAT-B5P7 |
IDT (for ISH) |
ggtctttagaaacttaacctttctgcttctttcccagcaacacccagtggtg |
| Mus-ChAT-B5P8 |
IDT (for ISH) |
gcgtaacagcccaggagagcaggtcggcagctctgctactctggattaagaa |
| Mus-ChAT-B5P9 |
IDT (for ISH) |
agctgtgaggaggtgctggacttacctaagttgccagtgcccccactgcagc |
| Mus-ChAT-B5P10 |
IDT (for ISH) |
aggaagagccaggccattgtgaagcggtttggggcccctggtggcctgggtg |
| Mus-ChAT-B5P11 |
IDT (for ISH) |
tctagccctgctgtgatctttgctcggcagcacttccaagacaccaatgacc |
| Mus-ChAT-B5P12 |
IDT (for ISH) |
ctaaggtttgcagccagcctcatctctggtgtgcttagctacaaggctctgc |
| Mus-ChAT-B5P13 |
IDT (for ISH) |
ggcactggagacctcagtgacacacacagggccctccagctccttcatggtg |
| Mus-ChAT-B5P14 |
IDT (for ISH) |
ggctgcagcttgaatggagcgaatcgttggtatgacaagtccctgcagtttg |
| Mus-ChAT-B5P15 |
IDT (for ISH) |
aagaagctcgtccgagctgactcagtgagtgaactccctgctcccagaaggc |
| Mus-ChAT-B5P16 |
IDT (for ISH) |
gccctccagctggcttactacaggctttaccagaggctggtgcccacctatg |
| Mus-ChAT-B5P17 |
IDT (for ISH) |
tacacagtcatggccataaccggcatggccattgacaaccatcttctggcac |
| Mus-ChAT-B5P18 |
IDT (for ISH) |
tataacccccagcctgaggccatcaccttctgcatctccagctttcacggct |
| Mus-ChAT-B5P19 |
IDT (for ISH) |
gcttgttgctgctcccctatccttgggggctcacatgaagctggcatgttaa |
| Mus-ChAT-B5P20 |
IDT (for ISH) |
atgagacccagcctggcttggaagcagcctgggtgggctgggagctccctct |
| Mus-Tac1-B2P1 |
IDT (for ISH) |
gtgcgcacctgcggagcatccccgcggtctgaccgcaaaatcgaacatgaaa |
| Mus-Tac1-B2P2 |
IDT (for ISH) |
aatcgatgccaacgatgatctaaattattggtccgactggtccgacagtgac |
| Mus-Tac1-B2P3 |
IDT (for ISH) |
gatcaaggaggcaatgccggagccctttgagcatcttctgcagagaatcgcc |
| Mus-Tac1-B2P4 |
IDT (for ISH) |
tttaaattctgtggcttatgaaagaagcgcgatgcagaactacgaaagaaga |
| Mus-Tac1-B2P5 |
IDT (for ISH) |
ataatgtactgagacttcggtatttgactctatttgtatcctagcagcatgt |
| Mus-Tac1-B2P6 |
IDT (for ISH) |
ctctcacaaaaggcataaaacagattcctttgttggactaatgggcaaaaga |
| Mus-Tac1-B2P7 |
IDT (for ISH) |
taaataaacccctgaacgcactatctattcatcttcatctgtgtcagtgagc |
| Mus-Tac1-B2P8 |
IDT (for ISH) |
gtaatttcagcaaagcacagtgatgaaggagctgtccaagcttggcagtgac |
| Mus-Tac1-B2P9 |
IDT (for ISH) |
gcagagactcctgtgcgtctctctcacgctacccctggttctgctttcatgc |
| Mus-Tac1-B2P10 |
IDT (for ISH) |
cctgtttcgtgactatatagagatgttttgaaaaagtttcaatgtaattctc |
| Mus-Tac1-B2P11 |
IDT (for ISH) |
aagacccaagcctcagcagttctttggattaatgggcaagcgggatgctgat |
| Mus-Tac1-B2P12 |
IDT (for ISH) |
cggacctgctccgctcctgcaccgcggccaaggagagcaaagagcgcccagc |
| Mus-Tac1-B2P13 |
IDT (for ISH) |
cctcgtggccgtggcggtcttttttctcgtttccactcaactgtttgcagag |
| Mus-Tac1-B2P14 |
IDT (for ISH) |
ctcagttgaaaaacaagtggccctgttaaaggctctttatggacatggccag |
| Mus-Tac1-B2P15 |
IDT (for ISH) |
tgaacggtaaaataaaatgtgcgctatgaggaatgattatttatttaataac |
| Mus-Tac1-B2P16 |
IDT (for ISH) |
ccaataagccttgtaattctaatgtggtgacctccccagaagtagaaattag |
| Mus-Tac1-B2P17 |
IDT (for ISH) |
atgttgttgtgagtgaaaaactcaaaaaagaagtgtttattttttcatattg |
| Mus-Tac1-B2P18 |
IDT (for ISH) |
agtctccaaagaaaggacccttctgtgagccagcgcaggcagctgctgctgg |
| Mus-Tac1-B2P19 |
IDT (for ISH) |
gtcttcagtcattgtatgatgtgttgtgatagctaccattttaaataaaaga |
| Mus-Th-B1P1 |
IDT (for ISH) |
ctcctcagttctgtgcgtcgggtgtctgacgatgtgcgcagtgccagagagg |
| Mus-Th-B1P2 |
IDT (for ISH) |
gtactggacagtcctcacaccatccggcgctccttagagggggtccaggatg |
| Mus-Th-B1P3 |
IDT (for ISH) |
tcagagcaggataccaagcaggccgaggctgtcacgtccccaaggttcattg |
| Mus-Th-B1P4 |
IDT (for ISH) |
cggcggcagagtctcatcgaggatgcccgcaaggagcgggaggcagcagcag |
| Mus-Th-B1P5 |
IDT (for ISH) |
gcagcagcggctgcggtagcctccgcggaacctgggaacccattggaggctg |
| Mus-Th-B1P6 |
IDT (for ISH) |
gtattcgaggagagggatggaaatgctgttctcaacctgctcttctccttga |
| Mus-Th-B1P7 |
IDT (for ISH) |
gccaaaatccaccacttagagacccggcctgcccagaggccactggcaggaa |
| Mus-Th-B1P8 |
IDT (for ISH) |
ccccacctggagtactttgtgcgcttcgaggtgcccagtggcgacctggctg |
| Mus-Th-B1P9 |
IDT (for ISH) |
aaggttccctggttcccaaggaaagtgtcagagttggataagtgtcaccacc |
| Mus-Th-B1P10 |
IDT (for ISH) |
gaggtatacgccacgctgaagggcctctatgctacccatgcctgccgggaac |
| Mus-Th-B1P11 |
IDT (for ISH) |
cgacccgtggccggtctactgtctgcccgtgattttctggccagtctggcct |
| Mus-Th-B1P12 |
IDT (for ISH) |
cgtgtgtttcagtgcacacagtacatccgtcatgcctcctcacctatgcact |
| Mus-Th-B1P13 |
IDT (for ISH) |
tatggagagctcctgcactccctgtcagaggagcccgaggtccgggcctttg |
| Mus-Th-B1P14 |
IDT (for ISH) |
gtcaccaagtttgaccctgacctggacctggaccatccgggcttctctgacc |
| Mus-Th-B1P15 |
IDT (for ISH) |
gcgtatcgccagcgccggaagctgattgcagagattgccttccaatacaagc |
| Mus-Th-B1P16 |
IDT (for ISH) |
ctggaggctttccagcttctggaacggtactgtggctaccgagaggacagca |
| Mus-Th-B1P17 |
IDT (for ISH) |
Cccgagccagactgctgccacgagctgctgggacacgtacccatgttggctg |
| Mus-Th-B1P18 |
IDT (for ISH) |
ctgtgtaaacagaatggggagctgaaggcttacggtgcagggctgctgtctt |
| Mus-Th-B1P19 |
IDT (for ISH) |
ccagacacagcagccgtgcagccctaccaagatcaaacctaccagccggtgt |
| Mus-Th-B1P20 |
IDT (for ISH) |
cgtatccagcgcccattctctgtgaagtttgacccgtacaccctggccattg |
|
| Software and algorithms |
|
|
|
| MedPC-IV |
MedAssociates |
https://www.med-associates.com/med-pc-v/
|
| Viewer3 |
BioObserve |
http://www.biobserve.com/behavioralresearch/
|
| FIJI |
OpenSource |
https://ImageJ.net/ImageJ
|
| MATLAB |
Mathworks |
https://www.mathworks.com/products/matlab.html
|
| DeepLabCut |
Mathis et al. (2018)
|
https://github.com/DeepLabCut
|
| CNMF |
Pnevmatikakis et al. (2016)
|
https://github.com/epnev/ca_source_extraction
|
| SpikeGLX (and associated command-line tools: CatGT, TPrime, and C_Waves) |
Bill Karsh (Janelia Research Campus) |
https://billkarsh.github.io/SpikeGLX
|
| Extracellular electrophysiology data processing pipeline |
Jennifer Colonell (Janelia Research Campus) |
https://github.com/jenniferColonell/ecephys_spike_sorting
|
| Kilosort 2.5 |
Pachitariu et al., (2016)
|
https://github.com/MouseLand/Kilosort
|
| Phy |
Cyrille Rossant (International Brain Laboratory) |
https://github.com/cortex-lab/phy
|
| Shield-2018 |
Swaney et al., (2019)
|
https://hub.docker.com/r/chunglabmit/shield-2018
https://github.com/chunglabmit/shield-2018
|
| Elastix |
Klein et al., (2010)
|
https://elastix.lumc.nl
|
| Lasagna |
OpenSerialSection (University College London) |
https://github.com/SainsburyWellcomeCentre/lasagna
|
| Atlas Electrophysiology |
International Brain Laboratory; Liu et al., (2021)
|
https://github.com/int-brain-lab/iblapps/tree/master/atlaselectrophysiology
|
| AllenCCF |
University College London |
https://github.com/cortex-lab/allenCCF
|
| Computation-through-dynamics (LFADS and fixed point analysis) |
Pandarinath et al. (2018b); Sussillo and Barak (2013)
|
https://github.com/google-research/computation-thru-dynamics
|
|
| Deposited data |
|
|
|
| STARmap data |
NeMO Archive |
asset.nemoarchive.org/dat-9ACQ8G2
|
| Electrophysiology data |
DANDI Archive |
N/A |
