Table 2.
Full-length h-fibroins of 11 caddisfly species derived from long-read sequencing ordered by silk usage
Species | GenBank Accession | Silk usage | Gene length | CDS | Exon 1 | Intron 1 | Exon 2 | Protein size | Molecular weight (kD) |
---|---|---|---|---|---|---|---|---|---|
Atopsyche davidsoni37 | OQ787677 | cocoon | 23,701 | 23,637 | 67 | 61 | 23,570 | 7,878 | 755.16 |
Himalospyche tibetanaa | OQ983471 | cocoon | 20,892 | 19,233 | 36 | 1,656 | 19,197 | 6,411 | 628.28 |
Eubasilissa regina32 | n.a., see32 | case | 25,256 | 25,161 | 40 | 92 | 25,121 | 8,386 | 815.86 |
Glyphotaelius pellucidusa | BK063450 | case | 24,412 | 23,592 | 39 | 817 | 23,553 | 7,864 | 801.63 |
Hesperophylax magnus33 | OQ787679 | case | 26,666 | 25,872 | 42 | 791 | 25,830 | 8,624 | 875.02 |
Limnephilus lunatusa | BK063451 | case | 30,382 | 29,544 | 42 | 835 | 29,502 | 9,848 | 998.81 |
Limnephilus marmoratusa | BK063452 | case | 27,154 | 26,322 | 42 | 829 | 26,280 | 8,774 | 882.45 |
Limnephilus rhombicusa | BK063453 | case | 27,903 | 27,081 | 39 | 819 | 27,042 | 9,027 | 896.38 |
Leptonema lineaticornea | OQ983470 | retreat | 20,538 | 20,451 | 42 | 84 | 20,409 | 6,817 | 675.22 |
Cheumatopsyche charitesa | BK063449 | retreat | 18,745 | 18,669 | 42 | 73 | 18,627 | 6,223 | 633.908 |
Arctopsyche grandsis37 | OQ787675 | retreat | 19,231 | 19,122 | 48 | 106 | 19,074 | 6,374 | 659.35 |
Gene length including introns and stop codon; CDS = protein coding DNA, gene length, CDS, exon, intron in bp; protein size in amino acids.
This study.