Key resource table

Reagent or resource	Source	Identifier
Deposited data
Pooled human macrophage array Ccdc88a KO peritoneal macrophages	NCBI GEO (The National Center for Biotechnology Information- Gene expression omnibus)	GSE134312 GSE203423
Proteomics dataset, reanalysed from PMID: 34731634	MassIVE repository	MSV000084672
Experimental models: Organisms/strains
Ccdc88a fl/fl LysMCre/- mice	PMID: 33055214
Software and algorithms
Numpy	Python	https://numpy.org
Scipy	Python	https://scipy.org
Seaborn	Python	https://seaborn.pydata.org
Matplotlib	Python	https://matplotlib.org
Hierarchical exploration of gene expression microarrays online (Hegemon)	HTML, JavaScript, Python, PHP	https://github.com/sahoo00/Hegemon
Boolean network explorer (BoNE)	Python	https://github.com/sahoo00/BoNE
Other
Interactive website	This paper	http://hegemon.ucsd.edu/SMaRT/