Table 1.

Prediction or validation of HSV-1 miRNAs registered in miRBase (v22.1)

Pre-miRNAs	Prediction/identification	Validation	Location (orientation)	Reference
miR-H4	Computer algorithm	ND	125,877–125,957 (+) 417–497 (−)	[15]
miR-H8	Computer algorithm	ND	123,803–123,876 (+) 2,498–2,571 (−)	[15]
miR-H11	Computer algorithm	ND	6,241–62,540 (+) 6,241–62,540 (−)	[15]
miR-H14	Computer algorithm	ND	4,466–4,554 (+) 121,820–121,908 (−)	[15]
miR-H1	Computational prediction	Northern blotting	118,317–118,402 (+) 7,972–8,057 (−)	[18]
miR-H5	Computational prediction	ND	126,720–126,799 (+) 151,398–151,477 (−)	[18]
miR-H12	Computational prediction	ND	146,150–146,237 (+) 131,960–132,047 (−)	[18]
miR-H13	Computational prediction	ND	131,971–132,034 (+) 146,163–146,226 (−)	[18]
miR-H2	454 sequencing	Northern blotting RT-PCR	121,827–121,901 (+) 4,473–4,547 (−)	[29]
miR-H3	454 sequencing	RT-PCR	125,729–125,809 (+) 565–645 (−)	[29]
miR-H6	454 sequencing	Northern blotting RT-PCR	7,972–8,057 (+) 118,317–118,402 (−)	[29]
miR-H7	Deep sequencing	RT-PCR	123,410–123,492 (+) 2,882–2,964 (−)	[19]
miR-H15	Parallel sequencing	ND	7,072–7,173 (+) 119,201–119,302 (−)	[30]
miR-H16	Parallel sequencing	ND	69,020–69,119 (+)	[30]
miR-H17	Parallel sequencing	ND	150,560–150,654 (+) 127,543–127,637 (−)	[30]
miR-H18	Parallel sequencing	ND	131,836–131,930 (+) 146,267–146,361 (−)	[30]
miR-H26a	High-throughput sequencing	Northern blotting RT-PCR	92,911–92,973 (+)	[31]
miR-H27	RNA structure 3.2	Northern blotting RT-PCR	2,883–2,965 (+) 123,409–123,491 (−)	[32]
miR-H28*	Deep sequencing	RT-PCR	12,387–12,533 (+)	[33]
miR-H29*	Deep sequencing	RT-PCR	64,902–65,076 (+)	[33]
sncRNA1*	Computer-driven predictions	Northern blotting Small RNA clone	119,756–119,817 (+) 6,557–6,618 (−)	[35]
sncRNA2*	Computer-driven predictions	Northern blotting Small RNA clone	120,146–12,0181 (+) 6,193–6,228 (−)	[35]

ND, not detected in reported papers.

*These miRNAs were not registered in miRBase.

^aDesignated as miR-92944 in the original paper.