Table 4:
Structural biology repositories.
Repository | Purpose | Substrate | Maximum size | Formats |
---|---|---|---|---|
PDB | Atomic coordinates and ensembles | Subcellular structures | Tens of MB | PDB, mmCIF |
EMDB | 3D reconstructions from processed EM data | Subcellular structure | GB | MRC, CCP4 |
EMPIAR | Electron microscopy raw and processed image data | Subcellular structures (single-particle cryo-EM, cryo-ET) | Tens of TB | TIFF, HDF5, MRC, MRCS, DM4, EER, IMAGIC, SPIDER, SCIPION, EMDB-SFF, AMIRA, STL, VTK, VTP, OBJ, AVI, JPEG, PNG, EMX, BLENDER, TXT |
IRRMC | X-ray diffraction raw data | Subcellular structures | Hundreds of MB | Raw diffraction data formats |
BMRB | NMR raw data | Subcellular structures | GB | CCPN, mmCIF, PDB, NMR-STAR, X-PLOR |