Extended Data Table 2.
Sequence coverage for metagenomics and metatranscriptomics
| Metagenomics | Metatranscriptomics | |||||
|---|---|---|---|---|---|---|
| Sample | Reads | Bases (Gb) | Mapped to assembly (%) | Reads | Bases (Gb) | Mapped to assembly (%) |
| P11SSC1_190916_c | 142713986 | 21.4 | 49.1 | 124166928 | 18.0 | 77.9 |
| P11SSC1_190916_f | 224647504 | 33.6 | 60.0 | 134601358 | 19.5 | 81.2 |
| P11SSC1_190916_i | 155786656 | 23.3 | 53.4 | 101082054 | 14.5 | 77.6 |
| P11SSC1_191110_c | 227806600 | 34.1 | 64.9 | 82931902 | 12.0 | 81.1 |
| P11SSC1_191119_f | 132381506 | 19.8 | 55.9 | 107176982 | 15.4 | 82.3 |
| P11SSC1_191119_i | 257335184 | 38.5 | 64.8 | 76710842 | 11.0 | 81.1 |
| P12SS_CTRL_191116_c | 135568486 | 20.3 | 52.9 | 92715120 | 13.2 | 77.0 |
| P12SS_CTRL_191116_f | 103105310 | 15.4 | 48.0 | 146171918 | 20.8 | 73.4 |
| P12SS_CTRL_191116_i | 89432070 | 13.4 | 45.8 | 85117324 | 12.1 | 81.9 |
| P15SSC1_190912_c | 141457632 | 21.2 | 44.5 | 95565802 | 13.6 | 77.1 |
| P15SSC1_190913_f | 136093864 | 20.4 | 41.0 | 102381422 | 14.5 | 73.1 |
| P15SSC1_190915_i | 116566008 | 17.5 | 39.7 | 105544744 | 15.0 | 67.5 |
| P15SSC1_191107_f | 126857110 | 19.0 | 43.0 | 22699542 | 3.2 | 68.0 |
| P15SSC1_191107_i | 141678932 | 21.2 | 43.5 | 104936440 | 14.9 | 75.1 |
| P15SSCI_191107_c | 131734810 | 19.7 | 45.6 | 106270712 | 15.0 | 78.9 |
| P24SSC2_190915_c | 131640432 | 19.7 | 54.6 | 93137922 | 13.3 | 80.2 |
| P24SSC2_190915_f | 108754462 | 16.3 | 50.0 | 145088652 | 20.6 | 77.5 |
| P24SSC2_190915_i | 143103050 | 21.4 | 55.0 | 120662996 | 17.1 | 73.7 |
| P24SSC2_191109_c | 122604752 | 18.4 | 49.7 | 124732280 | 17.6 | 74.2 |
| P24SSC2_191109_f | 145461884 | 21.8 | 59.2 | 79879116 | 11.5 | 74.6 |
| P24SSC2_191109_i | 101194304 | 15.2 | 44.3 | 72649070 | 10.2 | 77.6 |
| P26SSC2_190918_c | 138246448 | 20.7 | 58.3 | 76395558 | 10.8 | 63.8 |
| P26SSC2_190918_f | 110179686 | 16.5 | 54.9 | 94868962 | 13.4 | 65.5 |
| P26SSC2_190918_i | 112067984 | 16.8 | 49.2 | 116842828 | 16.7 | 76.7 |
| P26SSC2_191112_c | 98449944 | 14.7 | 50.9 | 85137010 | 12.0 | 72.2 |
| P26SSC2_191112_f | 119958450 | 18.0 | 58.9 | 78330638 | 10.9 | 68.4 |
| P26SSC2_191112_i | 175881098 | 26.3 | 62.4 | 97683038 | 13.7 | 68.9 |
| P34SSC2_190917_c | 132462676 | 19.8 | 55.5 | 71554676 | 10.2 | 77.8 |
| P34SSC2_190917_f | 101846050 | 15.3 | 48.6 | 183218676 | 25.8 | 78.6 |
| P34SSC2_190917_i | 127521864 | 19.1 | 51.5 | 85630146 | 12.0 | 69.7 |
| P34SSC2_191111_c | 154773318 | 23.2 | 57.8 | 83204978 | 12.0 | 84.2 |
| P34SSC2_191111_f | 134298460 | 20.1 | 56.9 | 78791904 | 10.8 | 72.9 |
| P34SSC2_191111_i | 112046872 | 16.8 | 53.5 | 68499682 | 9.9 | 80.1 |
| P35SSC1_190914_c | 112270418 | 16.8 | 56.0 | 16633060 | 2.3 | 65.2 |
| P35SSC1_190914_f | 112035746 | 16.8 | 55.5 | na | na | na |
| P35SSC1_190914_i | 128627610 | 19.3 | 60.0 | 14394504 | 2.0 | 37.3 |
| P35SSC1_191108_c | 195950226 | 29.3 | 64.4 | 13623088 | 1.9 | 59.7 |
| P35SSC1_191108_f | 128984880 | 19.3 | 56.8 | 97460190 | 13.5 | 72.1 |
| P35SSC1_191108_i | 109718370 | 16.4 | 55.1 | 86907854 | 12.1 | 74.3 |
a, 0 h; f, 6 h; i, 48 h
na, Metatranscriptomics of sample P35SSC1_191108_c were not completed due to sequencing issues
Read counts are post-filtering (as described in the methods section).