TABLE 4.
Open‐source tools for the integrated analysis of multi‐omics data.
| Tool name | Omics type | Website | Advantages | Ref |
|---|---|---|---|---|
| OmicsAnalyst | Transcriptomics, proteomics, metabolomics, microbiome | https://www.omicsanalyst.ca | Correlation network analysis, cluster heat map analysis, and dimension reduction analysis all have comprehensive options for parameter customization, view customization, and target analysis. | 303 |
| OmicsNet 2.0 | Genomics, transcriptomics, proteomics, metabolomics, microbiome | https://www.omicsnet.ca/ |
Web‐based multi‐omics analysis platform supporting 2D and 3D network visualization exploration. The Random Walk with Restart algorithm can be used to search for candidate disease markers. |
115 |
| Hiplot | Genomics, transcriptomics, proteomics | https://hiplot.com.cn/ | Have a variety of omics analysis, bioinformation analysis modules, especially in the possession of high‐quality visual mapping tools. | 304 |
| Wu Kong |
Genomics, transcriptomics, proteomics, phosphoproteomics Metabolomics |
https://www.omicsolution.com/ | Complete one‐click omics result generation, as well as a variety of statistical analysis, functional analysis, visualization analysis, clinical data analysis, multi‐omics cross‐association, and other modules. | 305 |
| OmicStudio | Genomics, transcriptomics, proteomics, metabolomics, microbiome | https://www.omicstudio.cn/ | A variety of modules for single‐cell omics analysis, easy data entry types, and high‐quality visual mapping tools are available. | 306 |
| Majorbio Cloud | Genomics, transcriptomics, proteomics, metabolomics, microbiome | https://cloud.majorbio.com/ | Provides interactive analysis reports that produce analysis results from bioinformation workflows into Web‐based interactive analysis reports. | 307 |