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. 2023 Jun 28;3(7):100518. doi: 10.1016/j.crmeth.2023.100518
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Clone RL2 Biolegend Cat#677902; RRID:AB_2565912
Clone CTD110.6 Biolegend Cat#838004; RRID:AB_2629520
GFPT1 Abcam Cat#ab125069; clone EPR4854; RRID:AB_10975709
OGT Abcam Cat#ab96718; RRID:AB_10680015
OGA Merck Cat#HPA036141: RRID:AB_10672079
α-tubulin Cell Signaling Technology Cat#3873; clone DM1A; RRID:AB_1904178
Anti-mouse IgG peroxidase conjugate Cell Signaling Technology Cat#7076; RRID:AB_330924
Anti-mouse IgM peroxidase conjugate Jackson Immunoresearch Cat#115-035-020; RRID:AB_2338502
Anti-rabbit IgG peroxidase conjugate Cell Signaling Technology Cat#7074; RRID:AB_2099233

Bacterial and virus strains

E. coli BL21 in-lab N/A
E. coli DH5alpha in-lab N/A

Chemicals, peptides, and recombinant proteins

Human Recombinant OGT R&D systems Cat#8446-GT
Alkaline phosphatase Thermo Scientific Cat#EF0651
Antarctic phosphatase New England BioLabs Cat#M0289
Human casein kinase II New England BioLabs Cat#P6010
Benzonase Sigma-Aldrich Cat#E1014
cOmplete™, EDTA-free Protease Inhibitor Cocktail Roche Cat#04693132001
HisPur Cobalt resin Thermo Scientific Cat#89964
GlcNAc-acceptor peptide (KKKYPGGSTPVSSANMM) Nordic BioSite Custom synthesis
Nunc® MaxiSorp™ 384 Sigma-Aldrich Cat#P6116
UDP-GlcNAc Sigma-Aldrich Cat#U4375
Amplex UltraRed Invitrogen Cat#A36006

Experimental models: Cell lines

AML12 mouse hepatocyte cell line ATCC Cat#CRL-2254
AML12 cells overexpression wild-type GFPT1 This paper N/A
AML12 cells overexpressing E328K mutant GFPT1 This paper N/A
TU8988T pancreatic adenocarcinoma cell line Kim et al. 202138 N/A
GFPT1 knockout TU8988T cells Kim et al. 202138 N/A
HCT 116 Homo human colorectal carcinoma ATCC Cat#CCL-247
NIH/3T3 mouse embryonic fibroblast ATCC Cat#CRL-1658
Hepa1-6 mouse hepatoma ATCC Cat#CRL-1830
293T human kidney epithelium ATCC Cat#CRL-3216
HeLa human adenocarcinoma ATCC Cat#CRM-CCL-2

Experimental models: Organisms/strains

Congenic C57BL/6JCrl mice Harlan RRID:IMSR_JAX:000664

Oligonucleotides

Human OGT PCR cloning
MunI-OGT 5′-ATCAATTGACCA
TGCTGTGTCCCACCCATGCAGA-3′
Metabion N/A
Human OGT PCR cloning:
OGT-STP-SalI 5′-ATATGTCGAC
TTATTCAACAGGCTTAATCATGTGGT-3′
Metabion N/A
Mouse Gfpt1 PCR cloning:
EcoRI-Gfpt1 5′-ATGAATTCGTGAC
CAACATCATGTGCGG-3′
Metabion N/A
Mouse Gfpt1 PCR cloning:
Gfpt1-STP-XhoI 5′-ATCTCGAGTTAC
TCTACTGTTACAGATTTGGC-3′
Metabion N/A
Gfpt1 PCR mutagenesis (removal of internal EcoRI site), forward primer
5′-CTCATTATTTTTATCAGAGCGCTGG-3′
Metabion N/A
Gfpt1 PCR mutagenesis (removal of internal EcoRI site), reverse primer
5′-TTCATTGTTATTCATAATGGAATCATCA-3′
Metabion N/A
Gfpt1 E328K PCR mutagenesis, forward primer
5′-TCTTCTGCATAAATGAACTAAAGTTG-3′
Metabion N/A
Gfpt1 E328K PCR mutagenesis, reverse primer
5′-AAATTTTTGAGCAGCCAGAATCTG-3′
Metabion N/A

Recombinant DNA

Wild-type and E328K mutant Mus musculus Gfpt1 cDNA PCR amplified and cloned into pBluescript and Sleeping Beauty donor plasmid This paper GenBank accession for Gfpt1 cDNA sequence NM_013528
Software and Algorithms
GraphPad Prism 9 GraphPad Software www.graphpad.com