Genomic Mapping of Metastatic Organotropism in Lung Adenocarcinoma

. Author manuscript; available in PMC: 2024 May 8.

Published in final edited form as: Cancer Cell. 2023 Apr 20;41(5):970–985.e3. doi: 10.1016/j.ccell.2023.03.018

KEY RESOURCES TABLE

REAGENT or RESOURCE	SOURCE	IDENTIFIER
Biological Samples
Human tumor and matched normal samples (blood)	This paper	This paper
Deposited Data
Clinical data, including metastatic events at the patient level is deposited for visualization, and download in the cBioPortal for Cancer Genomics.	This paper	https://www.cbioportal.org/study/summary?id=luad_mskcc_2023_met_organotropism.
Genomic alterations data (mutations, copy number alterations, fusions) is deposited for visualization, and download in the cBioPortal for Cancer Genomics.	This paper	https://www.cbioportal.org/study/summary?id=luad_mskcc_2023_met_organotropism.
GENIE-BPC NSCLCv2.0	Pugh et al, 2022	https://www.aacr.org/professionals/research/aacr-project-genie/bpc/nsclc/ https://genie.cbioportal.org/
Software and Algorithms
cBioPortal	Cerami et al., 2012	https://www.cbioportal.org/
FACETS	Shen and Seshan, 2016	https://github.com/mskcc/facets-suite
IMPACT Pipeline and Analysis tools	Cheng et al., 2015	https://github.com/rhshah/IMPACT-Pipeline https://github.com/mskcc
OncoKB	Chakravarty et al., 2017	https://github.com/oncokb/oncokb
tempoSig	Alexandrov et al., 2013	https://github.com/mskcc/tempoSig
R (v4.1.1)	R CRAN	https://cran.r-project.org/
Stata(v1.5)	StataCorp	https://www.stata.com/