Table 4.
Participant number | Sample type | Culturing | Molecular Culture | Illumina 16S sequencing | Remarks |
---|---|---|---|---|---|
00005 |
Bone Ulcer bed |
Sterile Sterile |
Sterile Mycobacterium sp. Pseudomonas aeruginosa |
Sterile Sterile |
MC and 16S had a very low number of reads, identified as contamination Not clear whether the MC signal was genuine MC signal was contamination or signal mix-up |
00008 | Ulcer bed | Sterile | Sterile | Enhydrobacter aerosaccus | Signal of 16S interpreted as contamination |
10010 | Bone | Sterile | Serratia sp. | Serratia sp. | |
10011 | Bone | Sterile | Proteus sp. | Proteus sp. | |
00023 | Bone | Sterile | Bacteroides fragilis | Bacteroides dorei/fragilis (post hoc) | Results of 16S are from post hoc analyses |
00024 | Bone | Sterile | Staphylococcus sp | Staphylococcus pettenkoferi |