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Required times for training and test of deepGBLUP across marker densities and train sizes
| Density | Train size | Training time (s) | Test time (s) |
|---|---|---|---|
| 50K | 9000 | 3.24 | 1.36 |
| 10K | 9000 | 1.07 | 1.14 |
| 5K | 9000 | 0.94 | 1.13 |
| 1K | 9000 | 0.85 | 1.12 |
| 50K | 5000 | 1.81 | 0.53 |
| 50K | 2500 | 0.9 | 0.24 |
| 50K | 1000 | 0.36 | 0.17 |
We recorded the average time of four traits (CWT, BF, EMA, and MS). Training time means a processing time for 1 epoch
