Table 1.
Summary of alphacoronavirus reads and additional viruses detected in the bat samples.
| Sample ID | Sex | Age | Total reads | AlphaCoV reads | AlphaCoV reads % | Nucleotide length | Number of Contigs | Other viruses in the sample |
|---|---|---|---|---|---|---|---|---|
| Bat_GB04NGRa | Male | Juvenile | 170,878 | 0 | 0.0 | NA | 0 | 1 |
| Bat_GB09NGRa | Female | Adult | 381,938 | 42,243 | 11.06 | 27,932 | 14 | 2, 3, 4, 5, 6, 7, 8 |
| Bat_GB010NGRa | Female | Adult | 980,132 | 0 | 0.0 | NA | 0 | 6, 9, 10, 11, 12 |
| Bat_GB012NGRa | Female | Juvenile | 516,000 | 35,906 | 6.96 | 27,544 | 3 | 13 |
| Bat_GB013NGRa | Female | Adult | 2269,408 | 19,170 | 0.84 | 27,968 | 1 | 7, 9, 10, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21 |
| Bat_NG017NGRb | Male | Adult | 150,242 | 0 | 0.0 | NA | 0 | NA |
| Bat_NG019NGRb | Female | Adult | 297,842 | 0 | 0.0 | NA | 0 | NA |
| Bat_NG022NGRb | Female | Adult | 151,812 | 0 | 0.0 | NA | 0 | NA |
| Bat_NG024NGRb | Female | Adult | 229,088 | 0 | 0.0 | NA | 0 | NA |
| Bat_NG033NGRb | Female | Adult | 388,590 | 0 | 0.0 | NA | 0 | NA |
Abbreviations: Alphacoronavirus, AlphaCoV; NA, Not Available.
bSample from Chaerephon sp.
aSample from Mops condylurus bat.
Other viruses are present in the sample with numbers from 1 to 21 as follows: 1 = Bat picornavirus, 2 = Bastrovirus, 3 = Parechovirus, 4 = Sapovirus, 5 = Guadeloupe mosquito virus, 6 = Southern cowpea mosaic virus, 7 = Hubei permutotetra-like virus, 8 = Drosophila A virus, 9 = Arivirus, 10 = Calhevirus, 11 = Solenopsis invicta virus, 12 = Unclassified picornavirus, 13 = Culex Daeseongdong-like virus, 14 = Riboviria sp, 15 = Bunderbeg virus, 16 = Euprosterna elaeasa virus, 17 = Hangzhou tombus-like virus, 18 = Hubei picorna-like virus, 19 = Monexpicovirus, 20 = Shuango permutotetra-like virus 1, 21 = Spissistilus festinus virus 1.