Table 1).
Target Transcript |
Genome | Hi-GRIL-Seq Chimeras |
SviR Range |
Predicted Interaction ΔG° |
Target Range |
---|---|---|---|---|---|
orf12.1 | PLE | 516±77.25 | 157 to 179 | −19.46 kcal/mol | −27 to −5 |
orf12 | PLE | 101.33±15.5 | 155 to 179 | −10.42 kcal/mol | −28 to −4 |
capR (orf2) | PLE | 51.66±8.3 | N/A | N/A | N/A |
gp120 | ICP1 | 44±12.5 | 35 to 48 | −11.85 kcal/mol | −11 to +3 |
gp203 | ICP1 | 30±14.4 | 37 to 64 | −21.91 kcal/mol | −35 to −2 |
orf3 | PLE | 29±1 | N/A | N/A | N/A |
gp107 | ICP1 | 25.6±8.7 | N/A | N/A | N/A |
gp59 | ICP1 | 25.3±8.1 | 41 to 63 | −17.83 kcal/mol | −20 to +2 |
orf18 | PLE | 19±2.64 | N/A | N/A | N/A |
gp82 | ICP1 | 15.3±10 | 20 to 48 | −12.86 kcal/mol | −12 to +22 |
gp78 | ICP1 | 15±7.9 | N/A | N/A | N/A |
orf7 | PLE | 14.33±2.8 | 150 to 177 | −16.85 kcal/mol | −2 to −21 |
gp53 | ICP1 | 12±7.2 | 33 to 52 | −23.14 kcal/mol | −7 to −27 |
The number of SviR-Target chimeric junctions with at least 10 junctions and the predicted IntaRNA interactions for each target. Junctions that mapped to within 50 bp upstream of the start codon of an ORF were attributed to the downstream ORF. Junctions that mapped to targets not predicted to interact with SviR by IntaRNA are qualified with N/A. Target ranges are relative to the start of translation, when applicable, and refer to predicted base pairing interactions as determined by IntaRNA.