Table 4.

All distinct loci associated with all epilepsy at conjFDR < 0.05

CHR	LEAD_SNP	Nearest gene	A1/A2	P-value	Novel in epilepsy	Psychiatric disorder shared with	Concord effect
1	rs13374459	MACF1	T/C	3.86 × 10−5	Novel	SCZ	No
2	rs2717055	CTD-2026C7.1	A/G	5.53 × 10−7	ILAE 2014	DEP, SCZ	No
6	rs7766356	ZSCAN23	T/C	5.76 × 10−6	Novel	SCZ	Yes
6	rs13219424	PTPRK	C/T	2.40 × 10−5	ILAE2	SCZ	Yes

P-values are reported for the epilepsy phenotype. Detailed information about the reported loci can be found in Supplementary Tables 1–8. BIP = bipolar disorder; DEP = depression; SCZ = schizophrenia.