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. 2023 Aug 2;11:168. doi: 10.1186/s40168-023-01595-x

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 5 — Relative abundance of the top 25 genera at day -7, 5, 13, 25, and 35 across the 3 intervention groups supplemented with A scGOS/lcFOS/2’-FL diet only B scGOS/lcFOS/2’-FL and B. breve NRBB01 and, C scGOS/lcFOS/2’-FL and the Bifidobacterium strain Mix without clindamycin treatment. Groups treated with clindamycin between day 7 and 14 (marked by red box) include groups supplemented with D scGOS/lcFOS/2’-FL diet only, E scGOS/lcFOS/2’-FL and B. breve NRBB01, and F scGOS/lcFOS/2’-FL and the Bifidobacterium strain mix. N = 5/group; unassigned genera have been excluded, Figure S3 details the taxonomic composition for individual animals with unassigned genera included