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. 2023 Aug 2;6:804. doi: 10.1038/s42003-023-05171-9

Fig. 1. The analysis pipeline used in this study, mainly following GATK’s recommended variant discovery pipeline to call genetic variants from RNAseq samples.

Fig. 1

Further filtering based on missingness, MAF, and LD was then done before generating principal components (PCs) representing the population structure.