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. 2023 Aug 3;24:432. doi: 10.1186/s12864-023-09539-3

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 6 — Evolutionary relatedness of the first reported Omicron variant from each region of Pakistan. A Phylogenetic tree for 944 Omicron genomes and related strains sharing the most recent common ancestor (MRCA). The first BA.1 sequence from each region, B Balochistan (purple); C Sindh (green); D AJK (light red); E Gilgit-Baltistan and KPK (yellow); F Punjab and ICT (light blue). Data are presented as Figtree v. 1.4.4 outputs using the maximum-likelihood tree generated using IQTREE v. 2.2.0. Grey triangles represent collapsed nodes of relatively distant sequences from the first Omicron sequences in each region. Scale bar presents nucleotide substitution/site