Table 2.
Candidate genes and genomic regions for FY and FP in Holstein and its crossbreds.
| SNP name | Gene | Chromosome | Trait | Breed | Number of cattle | Authors |
|---|---|---|---|---|---|---|
| rs29020642 | LOC512171 | 1 | FY | Canadian Holstein | 462 | [25] |
| rs41634488 | LOC786403 | 1 | ||||
| rs41637121 | APP | 1 | ||||
| rs41588659 | COL1A2 | 4 | ||||
| rs41591894 | ITPR2 | 5 | ||||
| rs41592942 | GUCY2C | 5 | ||||
| rs41652648 | ITPR2 | 5 | ||||
| rs41653025 | LOC540856 | 10 | ||||
| rs43703342 | LOC514626 | 11 | ||||
| rs41645253 | MGC139244 | 24 | ||||
| rs41569649 | CAMK2G | 28 | ||||
| rs41653440 | PSAP | 28 | FY | |||
| rs41653491 | LOC514949 | 28 | ||||
| rs43709929 | LOC514870 | 3 | ||||
| rs29018853 | LEC3 | 6 | ||||
| rs41592660 | LOC616136 | 9 | ||||
| rs41657163 | LOC535127 | 9 | ||||
| rs43710950 | TPM1 | 10 | ||||
| rs41567322 | TG | 14 | ||||
| rs41579063 | BIG1 | 14 | ||||
| rs41639879 | LOC505156 | 17 | ||||
| rs41641678 | LOC514186 | 21 | ||||
| rs41643783 | MGC139789 | 21 | ||||
| rs41648176 | LOC515764 | 26 | ||||
| rs29017368 | LOC515967 | 5 | FY | Chinese Holstein | 2,093 | [21] |
| rs41648982 | LOC511240 | 5 | ||||
| rs110090404 | C14H8orf33 | 14 | ||||
| rs41664719 | LOC516454 | X | ||||
| rs109948273 | EIF2C2 | 1 | FP | |||
| rs41617243 | KBTBD10 | 2 | ||||
| rs41652649 | ITPR2 | 5 | ||||
| rs43499009 | NFIB | 8 | ||||
| rs110704765 | LOC526069 | 11 | ||||
| rs110710474 | GFI1B | 11 | ||||
| rs109436130 | KHDRBS3 | 14 | ||||
| rs109529219 | RHPN1 | 14 | ||||
| rs110143087 | KCNK9 | 14 | ||||
| rs110293317 | KHDRBS3 | 14 | ||||
| rs110323635 | MAPK15 | 14 | ||||
| rs110411273 | GPR20 | 14 | ||||
| rs110718625 | KHDRBS3 | 14 | ||||
| rs111022074 | LOC100138440 | 14 | ||||
| rs41567288 | NIBP | 14 | ||||
| rs41576704 | EIF2C2 | 14 | ||||
| rs108995214 | KHDRBS3 | 14 | ||||
| rs109118650 | LOC618755 | 14 | ||||
| rs109225594 | KCNK9 | 14 | ||||
| rs109230014 | KCNK9 | 14 | ||||
| rs109241573 | KHDRBS3 | 14 | ||||
| rs109402117 | LOC618755 | 14 | ||||
| rs109476486 | LYPD2 | 14 | ||||
| rs109617015 | ZC3H3 | 14 | ||||
| rs109661298 | EEF1D | 14 | ||||
| rs109670279 | PTK2 | 14 | ||||
| rs109742607 | MAPK15 | 14 | ||||
| rs110057993 | KHDRBS3 | 14 | ||||
| rs110165168 | MIRN30D | 14 | ||||
| rs110339989 | OPLAH | 14 | ||||
| rs110351374 | COL22A1 | 14 | ||||
| rs110351748 | COL22A1 | 14 | ||||
| rs110424520 | GPR20 | 14 | ||||
| rs110501942 | LOC618755 | 14 | ||||
| rs110502094 | LOC100138440 | 14 | ||||
| rs110522477 | KHDRBS3 | 14 | ||||
| rs110545496 | KHDRBS3 | 14 | ||||
| rs110626984 | CYP11B1 | 14 | ||||
| rs110775004 | NIBP | 14 | ||||
| rs110892754 | LOC524939 | 14 | ||||
| rs111018678 | NIBP | 14 | ||||
| rs41576704 | EIF2C2 | 14 | ||||
| rs41624797 | PTK2 | 14 | ||||
| rs41627764 | ZNF623 | 14 | ||||
| rs41630614 | LOC785799 | 14 | ||||
| rs41657812 | LOC100138440 | 14 | ||||
| rs42305942 | LOC100138440 | 14 | ||||
| rs42310935 | LOC100138440 | 14 | ||||
| rs55617160 | NIBP | 14 | ||||
| rs109950724 | LOC782348 | 5 | FY | U.S. Holstein | 1,654 | [19] |
| rs110355546 | ZBPI | 13 | ||||
| rs41639184 | LPP | X | ||||
| rs110267314 | LM03 | 5 | FP | |||
| rs41592948 | GABARAPL1 | 5 | ||||
| rs109146371 | FOXHI | 14 | ||||
| rs109350371 | LOC786966 | 14 | ||||
| rs109421300 | DGAT1 | 14 | ||||
| rs109558046 | VPS28 | 14 | ||||
| rs109752439 | ZAT34 | 14 | ||||
| rs110017379 | NIBP | 14 | ||||
| rs110060785 | GPITIBP1 | 14 | ||||
| rs110891564 | KCNK9 | 14 | ||||
| rs110091513 | SART3 | 17 | ||||
| rs109062793 | AP1B4 | X | ||||
| rs109116007 | SYTL5 | X | ||||
| rs41919985 | FASN | 19 | FY | Italian Holstein | 800 | [22] |
| rs41613079 | EPHA7 | 9 | FP | Russian Holstein | 61 | [20] |
| rs42723319 | EPHA7 | 9 | ||||
| rs109350371 | LOC786966 | 14 | ||||
| rs109421300 | DGAT1 | 14 | ||||
| rs134390757 | LxR-α | 15 | FY | Italian Holstein | 45,115 | [23] |
| rs135588030 | ORL2 | 5 | FP | |||
| rs43349286 | LPAAT | 23 | ||||
| rs41624917 | PLCE1 | 26 | ||||
| rs41670205 | LRP1B | 2 | FP | Colombian Holstein | 150 | [10] |
| rs109245784 | CLCN1 | 4 | ||||
| rs43655765 | SNRNP200 | 11 | ||||
| rs110897514 | PCDH18 | 17 | ||||
| rs41571534 | WSCD1 | 19 | ||||
| rs41629750 | GRINA | 14 | FP | Russian Crossbreds | 477 | [9] |
| rs109350371 | PLEC | 14 | ||||
| rs109421300 | DGAT1 | 14 | ||||
| rs109968515 | CYHR1 | 14 | ||||
| rs110199901 | ZNF696 | 14 | ||||
| rs17870736 | VPS28 | 14 | ||||
| rs42406616 | ABCC9 | 5 | FY | US Holstein | 294,079 | [26] |
| rs42718234 | ABCC9 | 5 | ||||
| rs109350371 | LOC786966 | 14 | ||||
| rs133114040 | EPS8 | 5 | FP | |||
| rs109146371 | FOXH1 | 14 | FP | Chinese Holstein | 295 | [11] |
| rs109752439 | C14H8orf33 | 14 | ||||
| rs208148726 | AKT3 | 16 | ||||
| rs43526055 | ADRA1B | 7 | FY | Chinese Holstein | 1220 | [14] |
| rsl37676276 | VIT | 11 | ||||
| rs135780687 | GRPR | x | ||||
| rsl09528658 | EF400 | 17 | ||||
| rs42295213 | EPHA6 | 1 | FP | |||
| rs136949224 | SCARA5 | 8 | ||||
| rs110825388 | CPSF1/ADCK5 | 14 | FY | French Holstein | 6321 | [13] |
| rs211210569 | MGST1 | 5 | ||||
| rs208248675 | MGST1 | 5 | FP | |||
| rs136548039 | HERC5 | 6 | ||||
| rs109982707 | PAEP | 11 | ||||
| rs109234250 | DGAT1 | 14 | ||||
| rs208675276 | GPAT4 5′ UTR | 27 | ||||
| rs110199901 | LY6H | 14 | FY | Chinese Holstein | 300 | [15] |
| rs109742607 | MAPK15 | 14 | FP | |||
| rs41624797 | PTK2 | 14 | ||||
| Na rs | LY6H | 14 | ||||
| rs109476486 | LYNX1 | 14 | ||||
| rs109617015 | VAMP2 | 14 | ||||
| rs110339989 | OPLAH | 14 | ||||
| rs137787931 | MROH1 | 14 | ||||
| rs17870736 | VPS28 | 14 | ||||
| rs41627764 | MIR193A-2 | 14 | ||||
| rs41630614 | RPL8 | 14 | ||||
| rs41596885 | PDE4B | 3 | FY | Korean Holstein | 2780 | [17] |
| rs42314807 | PDE4B | 3 | ||||
| rs43454033 | ANO2 | 5 | ||||
| rs109234250 | DGAT1 | 14 | ||||
| rs109326954 | DGAT1 | 14 | ||||
| rs109421300 | DGAT1 | 14 | ||||
| rs110812136 | SPATC1 | 14 | ||||
| rs135258919 | HSF1 | 14 | ||||
| rs208317364 | DGAT1 | 14 | ||||
| rs435871639 | PKHD1 | 23 | ||||
| rs109414214 | EXT1 | 14 | FP | Indian Crossbreds | 96 | [27] |
| rs109632163 | NOV | 14 | ||||
| rs41614632 | - | 14 | ||||
| rs41665025 | SNTG1 | 14 | ||||
| rs41730911 | FABP, PMP2 | 14 | ||||
| rs42485761 | ZFPM2 | 14 | ||||
| rs43067787 | KCNB2 | 14 | ||||
| rs108957364 | AARD | 14 | ||||
| rs110390518 | - | 14 | ||||
| rs110981268 | SNX16 | 14 | ||||
| rs81118743 | RF00026 | 14 | ||||
| rs43527533 | TENM2 | 7 | FY | Chinese Holstein | 999 | [7] |
| rs42206791 | METTL15 | 15 | ||||
| rs137260850 | PLA2G4A | 16 | ||||
| rs109656599 | CDH13 | 18 | ||||
| rs109595510 | RCSD1 | 3 | FP | |||
| rs210744919 | MGST1 | 5 | ||||
| rs133840542 | SUPT2OH | 12 | ||||
| rs137071126 | SLC52A2 | 14 | ||||
| rs109278135 | NOL4 | 24 | ||||
| rs133996308 | PLAU | 28 |