Table 3.
Candidate genes and genomic regions for PY and PP in Holstein and its crossbreds.
| SNP name | Gene | Chromosome | Trait | Breed | Number of cattle | Authors |
|---|---|---|---|---|---|---|
| rs41591535 | LOC781748 | 4 | PY | Canadian Holstein | 462 | [25] |
| rs29011990 | MGC155155 | 8 | ||||
| rs41636749 | LOC538513 | 18 | ||||
| rs41648723 | CTBP2 | 26 | ||||
| rs41606880 | JDP1 | 28 | ||||
| rs41650658 | NRCAM | 4 | PP | |||
| rs29014633 | CACNG2 | 5 | ||||
| rs41590827 | RAC2 | 5 | ||||
| rs41593881 | HIF1A | 10 | ||||
| rs29021058 | PLCG1 | 13 | ||||
| rs41566192 | MGC127374 | 13 | ||||
| rs41637636 | SLC38A3 | 22 | ||||
| rs29016156 | LOC517805 | 23 | ||||
| rs109452554 | ETS2 | 1 | PY | Chinese Holstein | 2,093 | [21] |
| rs109680710 | DIP2A | 1 | ||||
| rs41586699 | PDE9A | 1 | ||||
| rs109271556 | LOC781902 | 3 | ||||
| rs109700191 | SLC30A7 | 3 | ||||
| rs29025951 | LOC100138725 | 3 | ||||
| rs41589462 | LOC539739 | 3 | ||||
| rs110896997 | PDHA2 | 6 | ||||
| rs41659807 | LOC788115 | 9 | ||||
| rs109819417 | NKAIN3 | 14 | ||||
| rs110618422 | CSF2RB | 5 | PP | |||
| rs42552739 | NCF4 | 5 | ||||
| rs81154068 | HERC3 | 6 | ||||
| rs29018333 | LOC536367 | 6 | ||||
| rs41622323 | PKD2 | 6 | ||||
| rs43463988 | LOC100140991 | 6 | ||||
| rs110805364 | NIBP | 14 | ||||
| Na rs | GHR | 20 | ||||
| rs109181046 | GDNF | 20 | ||||
| rs110679619 | RICTOR | 20 | ||||
| rs29013890 | LOC782833 | 20 | ||||
| rs29014437 | LOC782284 | 20 | ||||
| rs29018751 | NIPBL | 20 | ||||
| rs41574319 | RAI14 | 20 | ||||
| rs41581059 | LOC100138964 | 20 | ||||
| rs41937533 | LOC518808 | 20 | ||||
| rs41941633 | FYB | 20 | ||||
| rs41941646 | C9 | 20 | ||||
| rs41942492 | NIPBL | 20 | ||||
| rs41945918 | LOC782462 | 20 | ||||
| rs42954630 | NIPBL | 20 | ||||
| rs109583255 | CRABP1 | 21 | PY | U.S. Holstein | 1,654 | [19] |
| rs29011 699 | ALDH5A1 | 23 | ||||
| rs110736402 | L424P2 | X | ||||
| rs41598282 | ATP1B4 | X | ||||
| rs110675489 | SREBF2 | 5 | PP | |||
| rs110931400 | PDGFRA | 6 | ||||
| rs111032162 | PDGFRA | 6 | ||||
| rs109024105 | RPL37 | 9 | ||||
| rs109352200 | USP 3 8 | 17 | ||||
| rs41256775 | L0052 8054 | 17 | ||||
| rs109375227 | Artora | 18 | ||||
| rs109570377 | CX036 | X | ||||
| rs108964624 | LOC781178 | X | ||||
| rs110304690 | COL4 | X | ||||
| rs110328561 | LOC781178 | X | ||||
| rs41628209 | LOC616260 | X | ||||
| rs42967999 | LOC781902 | 3 | ||||
| rs41569048 | PTHLH | 5 | PP | Dutch Holstein | 1,713 | [28] |
| rs41640170 | HEATR7B2 | 20 | ||||
| rs42529901 | LOC788223 | 6 | PY | Portuguese Holstein | 526 | [24] |
| rs42749054 | MAPK9 | 7 | ||||
| rs109593545 | BRD7 | 18 | ||||
| rs41255191 | OTUD7A | 21 | ||||
| rs109826203 | ACSM5 | 25 | ||||
| Na rs | CSN3 | 6 | PP | Italian Holstein | 800 | [22] |
| rs109163366 | PPARGC1A | 6 | ||||
| rs110980619 | HPS3 | 1 | PY | Russian Holstein | 61 | [20] |
| rs41647284 | SLC16A7 | 5 | ||||
| rs41601570 | ARL15 | 20 | PP | |||
| rs109007595 | POU1F2 | 1 | PP | Italian Holstein | 45,115 | [23] |
| No rs | PPARGC1A | 6 | ||||
| rs109579682 | PPARGC1A | 6 | ||||
| rs43703011 | CSN3 | 6 | ||||
| rs43703017 | CSN5 | 6 | ||||
| rs137457402 | LPIN1 | 11 | ||||
| rs41255713 | CCL3 | 19 | ||||
| rs109136815 | GHR | 20 | ||||
| rs29023352 | INSIG1 | 4 | PP | Colombian Holstein | 150 | [10] |
| rs41624303 | Arntl2 | 5 | ||||
| rs29014693 | NMBR | 9 | ||||
| rs41772701 | CAPN5 | 15 | ||||
| rs110425841 | PODXL2 | 22 | ||||
| rs41576177 | OSBPL1A | 24 | ||||
| rs109670279 | BOD1L1 | 6 | PP | Russian Crossbreds | 477 | [9] |
| rs43592374 | UBE3D | 9 | ||||
| rs43710185 | IL15 | 17 | ||||
| rs109774038 | NDUFA9 | 5 | PY | US Holstein | 294,079 | [26] |
| rs132896414 | GALNT8 | 5 | ||||
| rs379188781 | CCND2 | 5 | ||||
| rs135228504 | ZNF34 | 14 | ||||
| rs109558046 | VPS13B | 14 | PP | |||
| rs110478571 | NLK | 19 | PP | Chinese Holstein | 769 | [12] |
| rs109558046 | LOC104975266 | 20 | ||||
| rs110000229 | GHR | 20 | ||||
| rs41257416 | HCN1 | 20 | ||||
| rs42418694 | SND1 | 4 | PY | Chinese Holstein | 295 | [11] |
| rs41579063 | ARFGEF1 | 14 | ||||
| rs41629750 | SPATC1 | 1 | PP | |||
| rs109748124 | TNFSF10 | 1 | ||||
| rs41602511 | YTHDF3 | 1 | ||||
| rs41617243 | KLHL41 | 2 | ||||
| rs110256520 | ATP1A1 | 3 | ||||
| rs110420888 | ATP1A1 | 3 | ||||
| rs134541510 | RPAP3 | 5 | ||||
| rs137408198 | CD27 | 5 | ||||
| rs29015155 | RPAP3 | 5 | ||||
| rs41592948 | GABARAPL1 | 5 | ||||
| rs110672723 | CSN2 | 6 | ||||
| rs110727998 | GML | 14 | ||||
| rs41579932 | ARMC1 | 14 | ||||
| rs110834172 | KSR2 | 17 | ||||
| rs29014438 | SLC1A3 | 20 | ||||
| rs29021190 | SLC1A3 | 20 | ||||
| rs41639260 | GHR | 20 | ||||
| rs41934711 | CCNB1 | 20 | ||||
| rs134480235 | SLCO1A2 | 5 | PY | Chinese Holstein | 1220 | [14] |
| rs109875012 | ZNF384 | 5 | PP | |||
| rs108996837 | EXOC3L4 | 21 | ||||
| rs136903701 | ABCC9 | 5 | PY | French Holstein | 6321 | [13] |
| rs43703011 | CSN2 | 6 | ||||
| rs134511693 | EFNA4 | 3 | PP | |||
| rs456403270 | TBC1D22A | 5 | ||||
| rs383909572 | HSTN | 6 | ||||
| rs41622323 | PKD2 | 6 | ||||
| rs135458711 | SLC39A4 | 14 | ||||
| rs110144962 | APOA4 | 15 | ||||
| rs208817293 | WDR74/U2 | 29 | ||||
| rs378017490 | PICALM | 29 | ||||
| rs799074643 | UMPS | 1 | PY | Korean Holstein | 2780 | [17] |
| rs211419403 | GFRA2 | 8 | ||||
| rs109957491 | MFSD1 | 1 | PY | Chinese Holstein | 999 | [7] |
| rs109097262 | PLCB4 | 13 | ||||
| rs41906111 | MY01D | 19 | ||||
| rs43496186 | WNT9A | 7 | PP | |||
| rs109425744 | CORO2B | 10 | ||||
| rs135708753 | ATP11A | 12 | ||||
| rs132711282 | FBX O 43 | 14 | ||||
| rs43002440 | KHDRBS3 | 14 | ||||
| rs110387086 | MLXIP | 17 |