Figure 3.

LegNet accurately predicts promoter expression. Prediction of native promoter expression for yeast grown in complex medium (YPD, A) and defined medium (SD-Ura, B), hexagonal binning plots, the color scale denotes the number of promoters in a bin. Comparison of LegNet prediction performance for native yeast promoter sequences compared to the transformer model of Vaishnav et al.; (C) Pearson correlation between predictions and ground truth; (D) Spearman correlation; note the Y-axis lower limit. Violin plots show bootstrap with n = 10 000. *$P<0.001$, Silver's dependent correlations test (Silver et al. 2004) for the total data.