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. 2023 Aug 3;18:68. doi: 10.1186/s40793-023-00524-7

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 5 — Structure, diversity and composition of the endosphere bacterial community from two common bean cultivars non-inoculated or inoculated with Fusarium oxysporum (fox). Principal coordinate analysis (CAP) comparing the endophytic community using (A) 16S rRNA and (B) metagenome data. Significant clusters (PERMANOVA, P < 0.05) are indicated by lines in the CAP graphs. (C) Diversity measurements for the endophytic community. Asterisks in the diversity graphs indicate signifcant differences based on Tukey’s test (P < 0.05). (D) Linear discriminant analysis (LDA) Effect Size (LEfSe) of microbial taxa enriched after fox inoculation in the endophytic community of the fox-resistant cultivar at genus level. Filled squares at the left side of the graphs indicate the datasets were the differential taxa were found. R = fox-resistant cultivar; Rfox = fox-resistant cultivar infected; S = susceptible cultivar; Sfox – susceptible cultivar infected; Bulk = bulk soil