REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
mouse anti-nc82 antibody | DSHB | RRID: AB_2314866 |
chicken anti-GFP antibody | Abcam | RRID: ab13970 |
mouse anti-ChAT4B antibody | DSHB | RRID: AB_528122 |
rabbit anti-GABA antibody | Sigma | RRID: A2052 |
goat Alexa-568 anti-mouse | Invitrogen | RRID: A21144 |
goat Alexa-488 anti-chicken | Invitrogen | RRID: A11038 |
goat Alexa-647 anti-mouse | Invitrogen | RRID: A21240 |
goat Alexa-568 anti-rabbit | Invitrogen | RRID: A11036 |
Experimental models: Organisms/strains | ||
Canton-S strain | Jefferis lab, originated in Martin Heisenberg lab | CSMH |
lPN-SS: w[1118]; GMR54A11-AD; BJD_115F09 |
gift from Dr Yoshinori Aso | SS01189 |
lvPN-SS: w[1118]; GMR38D01-AD; GMR59G08-DBD |
gift from Dr Mike Dolan | LH467 |
yw, UAS-mCD8-GFP, UAS-mCD8-GFP | MRC Laboratory of Molecular Biology | N/A |
w[1118];20XUAS-opGCaMP6s su(Hw)attP5; |
gift from Yonil Jung,Barrett Pfeiffer, and David Anderson | N/A |
w[1118];20XUAS-opGCaMP6f su(Hw)attP5; |
gift from Yonil Jung,Barrett Pfeiffer, and David Anderson | N/A |
w, Or67d-GAL4;; | BDSC | RRID: BDSC_9998 |
lPN GAL4 w[1118];; GMR24A10-GAL4 |
BDSC | RRID: BDSC_49059 |
il3LN6 GAL4 w[1118];; VT046100-GAL4 |
BDSC | RRID: BDSC_75076 |
W; UAS-Ort; | Liu and Wilson33 | N/A |
VT033066-LexA | Cachero et al.72 | N/A |
w[1118];; GMR53A03-GAL4 | BDSC | RRID: BDSC_38858 (currently not available) |
pC1-SS2: w[1118]; VT002064-p65ADZp in attP2, dsx-DBD | Wang et al.34 | Janelia FlyLight SS59911 |
w[1118], 13XLexAop-IVS-jGCaMP7f su(Hw)attP8;; | BDSC | RRID: BDSC_80910 |
w;; dsx-LexA | Deutsch et al.73 | N/A |
w[1118]; 20XUAS-CsChrimson-mVenus; | BDSC | RRID: BDSC_55135 |
w[1118], UAS-Hid, UAS-Reaper;; | Wang et al.34 | N/A |
AV2a2-SS: w[1118]; GMR30A10-AD; GMR53A03-DBD |
Dolan et al.35 | LH907 |
aSP-g-SS1:w[1118];; GMR76G09-DBD, JK1029-AD | this study | N/A |
w[1118]; P{y[+t7.7] w[+mC]=20XUAS-IVS-GCaMP6f}attP40 | BDSC | RRID: BDSC_42747 |
yw, Or67d-QF;; | Riabinina and Potter74 | N/A |
;QUAS-Kir; | gift from Chris Potter | N/A |
w[1118];; Ir94e-GAL41 | Koh et al.45 | N/A |
w[1118];; Ir94e-GAL42 | Sánchez-Alcañiz et al.46 | N/A |
w[1118]; PBac{y[+t7.7] w[+mC]=20XUAS-IVS-jGCaMP7f}VK00005 | BDSC | RRID: BDSC_79031 |
w[1118]; GMR81A04-LexA; | BDSC | RRID: BDSC_54390 |
aSP-g-SS1: w[1118];;GMR76G09-DBD,JK1029 |
this study | N/A |
aSP-g-SS1/aSP-g-SS2: w[1118];;GMR76G09-DBD,JK1029/GMR81A04-DBD,JK1029 |
this study | N/A |
JK1029, empty-DBD: w[1118]; JK1029,GAL4-DBD.empty control (BPZpGDBD) |
this study | N/A |
w[1118];; fruFLP | Von Philipsborn et al.75 | N/A |
w[1118];;20XUAS> myrTopHat2 > GCaMP6f su(Hw)attP1 |
gift from Yonil Jung,Barrett Pfeiffer, and David Anderson | N/A |
aSP-g-FLP1: w[1118];; 76G09-GAL4, fruFLP |
this study | N/A |
aSP-g-FLP2: w[1118];; 81A04-GAL4, fruFLP |
this study | N/A |
empty-GAL4 FLP: w[1118];; empty-GAL4 (pBDPGAL4Uw), fruFLP |
this study | N/A |
w;; UAS>mCherry>eGFP:Kir2.1 | Watanabe et al.76 | N/A |
aSP-g LexA FLP: w[1118];; 81A04-LexA, fruFLP |
this study | N/A |
13xLexAop>dsFRT>CsChrimson:mVenus;; | Gift from Yoshinori Aso | N/A |
w;; 20xUAS>dsFRT>CsChrimson:mVenus | Takayanagi-Kiya and Kiya77 | N/A |
w;; pJFRC-10xUAS-IVS-eGFP-Kir2.1; | Janelia Research Campus | N/A |
Software and algorithms | ||
R | Open source | RRID:SCR_001905 |
natverse (R package) | Open source, Bates et al.78 | https://github.com/natverse |
MATLAB | MathWorks | RRID:SCR_001622 |
ScanImage 2020 | Vidrio Technologies | RRID:SCR_014307 |
Python | Open source | RRID:SCR_008394 |
CATMAID | Open source, Saalfeld et al.79 |
RRID:SCR_006278 |
Fiji | Open source | RRID:SCR_002285 |
Bonsai | Open source | RRID:SCR_017218 |
DeepLabCut | Open source, Mathis et al.27 | https://deeplabcut.github.io/DeepLabCut |
FicTrac | Open source, Moore et al.80 | https://github.com/rjdmoore/fictrac |
Deposited data | ||
Custom code for connectomics analyses | this study |
https://github.com/jefferislab/2023_cVA_Taisz_Galili https://doi.org/10.5281/zenodo.7853021 |
Image stack from EM neurons for MIP search | this study |
https://github.com/jefferislab/skeleton-to-MIP https://doi.org/10.5281/zenodo.78530219 |