Table 1.
The human proteome in UniProtKB
| Sequence set | No of sequences (2023_02) | Website query | Download |
|---|---|---|---|
| Canonical sequences | 20,407 | proteome:up000005640 AND reviewed:true | Website - FASTA (Canonical), Tab-separated, XML. RDF/XML,Text, GFF, JSON |
| aEntries containing additional reviewed isoforms | 10,647 | proteome:up000005640 AND (cc_ap:∗) (identifies entries containing reviewed isoforms) | Website - FASTA (Canonical + isoforms) |
| Number of reviewed isoforms | 22,095 | www.uniprot.org/help/downloads - FASTA | |
| Additional unreviewed isoforms | 62,085 | proteome:up000005640 AND reviewed:false | Website - FASTA Tab-separated, XML. RDF/XML,Text, GFF |
| Complete proteome (Reviewed entries + unreviewed isoforms) | 82,492 | proteome:up000005640 | Website - FASTA Tab-separated, XML. RDF/XML,Text, GFF |
| Total proteome (Canonical sequences + reviewed isoforms + unreviewed isoforms) | 104,587 | proteome:up000005640 | Website - FASTA (download FASTA (canonical + isoform)) |
| Additional UniProtKB/TrEMBL entries | 125,361 | (taxonomy_id:9606) AND (reviewed:false) NOT (proteome:up000005640) | Website - FASTA Tab-separated, XML. RDF/XML,Text, GFF |
a
Query gives entries containing reviewed isoforms, not individual entries for each isoform.