. 2023 Jul 1;299(8):105003. doi: 10.1016/j.jbc.2023.105003

Table 1.

RNA sequencing data from transfer culture for genes with homology to 3,4-DHB pathway genes

Enzyme	Predicted gene	Mean fructose TPM	Mean 3,4-DHB TPM	Fold change (3,4-DHB vs. Fructose)
Protocatechuate 3,4-dioxygenease	*NRRL3_01405*	8.24	18,330.48	2223.40
	NRRL3_02644	16.77	464.59	27.70
	NRRL3_04277	1.62	0.72	0.45
	NRRL3_04787	11.46	100.19	8.74
	NRRL3_05330	2.64	9.31	3.53
Carboxy-cis,cis-muconate cyclase	*NRRL3_02586*	16.88	1016.83	60.23
3-carboxymuconolactone hydrolase/decarboxylase	NRRL3_00837	21.48	1038.39	48.34
	*NRRL3_01409*	10.51	727.89	69.23
	NRRL3_03759	1.51	6.76	4.49
	NRRL3_08340	15.20	3661.57	240.94
β-ketoadipate:succinyl-CoA transferase	NRRL3_01593	32.52	55.19	1.70
	*NRRL3_01886*	20.66	1499.22	72.58
	NRRL3_11640	32.14	360.56	11.22
β-ketoadipyl-CoA thiolase	*NRRL3_01526*	19.21	1410.97	73.47
	NRRL3_07786	274.13	254.02	0.93
	NRRL3_11162	37.38	143.40	3.84

Mean values are the average of duplicates. Complete data and DESeq2 (58) analysis shown in Table S3. Predicted genes in bold. TPM, transcripts per million.