Table 2.
Novel SNPs that were either significant in the analysis including all groups or significant in a subgroup analysis
| ID | Chrom | Position | Gene | Effect allele | Effect allele freq | Beta | se | P-value | Previous associations |
|---|---|---|---|---|---|---|---|---|---|
| 1:168960001 | 1 | 168960001 | AT | 0.978861 | 0.118722 | 0.030362 | 9.22E-05 | Unrelated | |
| rs17153738 | 7 | 106658309 | T | 0.654342 | −0.03904 | 0.008896 | 1.14E-05 | Unrelated | |
| rs76798800 | 1 | 154994978 | DCST2 | G | 0.733766 | 0.037472 | 0.009505 | 8.08E-05 | BMI/WHR |
| rs371649660 | 7 | 74353884 | GTF2I | C | 0.890097 | 0.095554 | 0.014636 | 6.63E-11 | BMI/WHR |
| rs2821226 | 1 | 203517292 | A | 0.472495 | 0.048463 | 0.008491 | 1.15E-08 | BMI/WHR | |
| rs199679345 | 6 | 34234953 | C | 0.951861 | −0.13681 | 0.019876 | 5.85E-12 | Related | |
| 20:43246633 | 20 | 43246633 | PKIG | CACAA | 0.952468 | 0.126113 | 0.02029 | 5.11E-10 | None |
| rs201458438 | 12 | 123801250 | SBNO1 | C | 0.320434 | −0.06178 | 0.00955 | 9.84E-11 | BMI/WHR |
| rs38169 | 7 | 15893300 | C | 0.244283 | 0.061601 | 0.009802 | 3.28E-10 | Related | |
| rs10823909 | 10 | 73989184 | ANAPC16 | T | 0.911994 | −0.08372 | 0.014924 | 2.03E-08 | BMI/WHR |
| rs72752197 | 5 | 44627323 | C | 0.780923 | 0.057415 | 0.010266 | 2.23E-08 | Unrelated | |
| rs11057368 | 12 | 124309574 | DNAH10 | G | 0.633135 | 0.048748 | 0.008813 | 3.18E-08 | BMI/WHR |
| rs11187152 | 10 | 94500111 | G | 0.923309 | 0.098068 | 0.016017 | 9.21E-10 | Unrelated | |
| rs1916334 | 12 | 122484294 | BCL7A | G | 0.804831 | −0.06304 | 0.010707 | 3.93E-09 | BMI/WHR |
| rs56218834 | 2 | 25520857 | DNMT3A | G | 0.572974 | 0.062063 | 0.008558 | 4.12E-13 | BMI/WHR |
| rs556132116 | 17 | 17931884 | ATPAF2 | C | 0.689899 | −0.05928 | 0.0108 | 4.04E-08 | BMI/WHR |
| 6:19809493 | 6 | 19809493 | RP1-167F1.2 | TA | 0.689373 | 0.050394 | 0.009156 | 3.71E-08 | None |
| 10:114673015 | 10 | 114673015 | GGT | 0.856163 | 0.071575 | 0.012742 | 1.94E-08 | None | |
| rs142201902 | 3 | 185153047 | MAP3K13 | C | 0.92574 | −0.09285 | 0.016139 | 8.76E-09 | BMI/WHR |
| rs34636896 | 10 | 114647936 | G | 0.183938 | −0.10405 | 0.011741 | 7.84E-19 | Unrelated | |
| 19:1149092 | 19 | 1149092 | SBNO2 | GC | 0.638361 | 0.053763 | 0.009113 | 3.65E-09 | Unrelated |
| rs876475 | 9 | 81545012 | G | 0.599162 | −0.04786 | 0.008595 | 2.57E-08 | Unrelated | |
| rs59521405 | 2 | 112264989 | T | 0.752715 | 0.060811 | 0.009975 | 1.09E-09 | BMI/WHR | |
| rs78535155 | 13 | 49435399 | A | 0.985318 | 0.198544 | 0.036376 | 4.81E-08 | None | |
| rs9934018 | 16 | 1504934 | CLCN7 | T | 0.593146 | 0.046978 | 0.00857 | 4.22E-08 | Unrelated |
P-values are shown for the all group analysis.