Table 1. DNA Oligonucleotide Baits Used in This Studya.
| name | sequence forward (5′->3′) | Sequence reverse (5′->3′) |
|---|---|---|
| SP/KLF bait | /5Biosg/GAGAGCCCCGCCCCCTGGCT | AGCCAGGGGGCGGGGCTCTC |
| SP/KLF negative control bait | /5Biosg/GAGAGAAAATAAAACTGGCT | AGCCAGTTTTATTTTCTCTC |
| CGCG bait | /5Biosg/GCCGCCGCCCTTCTCGCGAGACTGCCGGGCC | GGCCCGGCAGTCTCGCGAGAAGGGCGGCGGC |
| CGCG negative control bait | /5Biosg/GCCGCCGCCCTTCGGCAAGTCCTGCCGGGCC | GGCCCGGCAGGACTTGCCGAAGGGCGGCGGC |
| methylated CGCG bait | /5Biosg/GCCGCCGCCCTTCT/iMe-dC/G/iMe-dC/GAGACTGCCGGGCC | GGCCCGGCAGTCT/iMe-dC/G/iMe-dC/GAGAAGGGCGGCGGC |
| BEND3 bait | /5Biosg/GCCGCCGCCCTCCCACGCGCTGCCGGGCC | GGCCCGGCAGCGCGTGGGAGGGCGGCGGC |
| BEND3 negative control bait | /5Biosg/GCCGCCGCCCTGCAGCCCCCTGCCGGGCC | GGCCCGGCAGGGGGCTGCAGGGCGGCGGC |
| methylated BEND3 bait | /5Biosg/GCCGCCGCCCTCCCA/iMe-dC/G/iMe-dC/GCTGCCGGGCC | GGCCCGGCAG/iMe-dC/G/iMe-dC/GTGGGAGGGCGGCGGC |
a
Bases defining the motif are marked in bold.