Table 1.
Potential regions to design PCR primers for the discrimination of Albizia odoratissima (KX852437), A. bracteata (MN709837) and A. kalkora (MW420923).
| No. | Species | Forward region start-end |
Inverse region start-end |
Location of DNA barcodes | Forward sequences | Inverse sequences |
|---|---|---|---|---|---|---|
| 1 | A. odoratissima | 11122–11177 | 11227–11276 | atpA | AAAACATTAAATGAGATTTTTAATCAATTTTTTTCTACTTGTTCCTGAAGTAAAAA | AAAACATTAAATGAGATTTTTAATCAATTTTTTTCTACTT GTTCCTGAAGTAAAAA |
| A. bracteata | 12134–12189 | 12239–12288 | ||||
| A. kalkora | 12056–12111 | 12161–12210 | ||||
| 2 | A. odoratissima | 12004–12038 | 12082–12134 | atpA | ACTACAATAGTGTATTCCATTGCTCCCCTTTCTTG | ACTACAATAGTGTATTCCATTGCTCCCCTTTCTTG |
| A. bracteata | 13016–13050 | 13094–13146 | ||||
| A. kalkora | 12938–12972 | 13016–13068 | ||||
| 3 | A. odoratissima | 14953–15088 | 15141–15197 | atpH-atpI | CCGACGGCCAACCCAGCAGCAATAACCGAAGCGGCAGAAATCAGTGGATTCATG ATAAGTTCCTCGCACCAAAAATAAAGAAATAGTTAATGATAC AATCAACCAACAAATTATGACTTAATTATTCCATCATTAA | CCGACGGCCAACCCAGCAGCAATAACCGAAGCGGCAGAAATCAGT GGATTCATGATAAGTTCCTCGCACCAAAAATAAAGAAATAGTTAA TGATACAATCAACCAACAAATTATGACTTAATTATTCCATCATTAA |
| A. bracteata | 16000–16135 | 16186–16242 | ||||
| A. kalkora | 15867–16002 | 16052–16108 | ||||
| 4 | A. odoratissima | 16903–17138 | 17203–17260 | atpI-rps2 | GAACAGCTATAATGGCTGAAACTAATAAAATAGCAATTACAACCCAAGAAGTAA TAAGTACTTGGGCATGGACTTGGAAACCCCCTATTTGCCAATAGAAATGTTGG CCTACTTCCACAGCCGATATATCGTATAATCTTTTTAATGTGTTGATGGAACATAAT AGAACATTCATATTGCCCTCTGAAAGAAATACAACTTTAAAAGGAATTATTTTGA TTCAACCATCTCTTTTT | GAACAGCTATAATGGCTGAAACTAATAAAATAGCAATTACAACCC AAGAAGTAATAAGTACTTGGGCATGGACTTGGAAACCCCCTATTT GCCAATAGAAATGTTGGCCTACTTCCACAGCCGATATATCGTATAATC TTTTTAATGTGTTGATGGAACATAATAGAACATTCATATTGCCCTCT GAAAGAAATACAACTTTAAAAGGAATTATTTTGATTCAACCATCTCTTTTT |
| A. bracteata | 18162–18397 | 18470–18527 | ||||
| A. kalkora | 17979–18214 | 18287–18344 | ||||
| 5 | A. odoratissima | 17203–17260 | 17312–17609 | atpI-rps2 and rps2 | TTTTTTGCGCGATTCAGTAATAGTATAGTAACCGATTCCATAAATCTATGGAGTTCCC | TTTTTTGCGCGATTCAGTAATAGTATAGTAACCGATTCCATAAATC TATGGAGTTCCC |
| A. bracteata | 18470–18527 | 18585–18882 | ||||
| A. kalkora | 18287–18344 | 18396–18693 | ||||
| 6 | A. odoratissima | 18053–18078 | 18123–18225 | rps2-rpoC2 | GATCAGGTATCCTGAAATAGAAATAA | GATCAGGTATCCTGAAATAGAAATAA |
| A. bracteata | 19323–19348 | 19393–19490 | ||||
| A. kalkora | 19135–19160 | 19205–19302 | ||||
| 7 | A. odoratissima | 29593–29618 | 29664–29713 | rpoB-trnC-GCA | AATACTGATTAGTTATGTCTCAATTT | AATACTGATTAGTTATGTCTCAATTT |
| A. bracteata | 30855–30880 | 30926–30975 | ||||
| A. kalkora | 30674–30699 | 30749–30798 | ||||
| 8 | A. odoratissima | 29664–29713 | 29782–29830 | rpoB-trnC-GCA | ATTGAAGAATCATTCATGAATAGTTAATGGTTCCGATTTGTCCTGAATTT | ATTGAAGAATCATTCATGAATAGTTAATGGTTCCGATTTGTCCTGAATTT |
| A. bracteata | 30926–30975 | 31042–31090 | ||||
| A. kalkora | 30749–30798 | 30866–30914 | ||||
| 9 | A. odoratissima | 52029–52062 | 52137–52211 | intron of trnL-UAA | ATCGAAACTCCAGAAAAGAAAGGATCAAGGATGA | ATCGAAACTCCAGAAAAGAAAGGATCAAGGATGA |
| A. bracteata | 52899–52932 | 53003–53077 | ||||
| A. kalkora | 52790–52823 | 52898–52972 | ||||
| 10 | A. odoratissima | 5103–5133 | 5205–5326 | matK-rps16 | AAAAGAAATAAAGAAAGAAAAGAAGTTCTTT | AAAAGAAATAAAGAAAGAAAAGAAGTTCTTT |
| A. bracteata | 5135–5165 | 5242–5363 | ||||
| A. kalkora | 5137–5167 | 5234–5355 |
Note: The regions were sorted by the K-2p distance of the DNA barcodes between each pair of regions.